HL_7OLD_101

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLD_101 not in the Motif Atlas

Geometric match to HL_3OXE_002

Geometric discrepancy: 0.212

The information below is about HL_3OXE_002

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37569.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

7OLD|1|2|C|1393
7OLD|1|2|U|1394
7OLD|1|2|C|1395
7OLD|1|2|A|1396
7OLD|1|2|A|1397
7OLD|1|2|G|1398

Current chains

Chain 2

18S rRNA

Nearby chains

Chain A

Putative guanine nucleotide-binding protein

Chain SR

40S ribosomal protein S17-like protein

Chain Sc

40S ribosomal protein S28-like protein