HL_7OLD_110
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 7OLD|1|4|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OLD_110 not in the Motif Atlas
- Homologous match to HL_8C3A_230
- Geometric discrepancy: 0.3781
- The information below is about HL_8C3A_230
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
7OLD|1|4|U|69
7OLD|1|4|G|70
7OLD|1|4|A|71
7OLD|1|4|A|72
7OLD|1|4|U|73
7OLD|1|4|U|74
7OLD|1|4|G|75
7OLD|1|4|C|76
7OLD|1|4|A|77
7OLD|1|4|G|78
7OLD|1|4|A|79
7OLD|1|4|A|80
7OLD|1|4|U|81
7OLD|1|4|U|82
7OLD|1|4|C|83
7OLD|1|4|C|84
7OLD|1|4|G|85
7OLD|1|4|U|86
7OLD|1|4|G|87
7OLD|1|4|A|88
7OLD|1|4|A|89
Current chains
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LY
- 60S ribosomal protein L26-like protein
- Chain Lh
- Dolichyl-diphosphooligosaccharide--protein glycotransferase
- Chain Lj
- Ribosomal protein L37
- Chain Ll
- Ribosomal protein eL39
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