HL_7OLD_114
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GCUUUCACC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OLD_114 not in the Motif Atlas
- Homologous match to HL_4V90_033
- Geometric discrepancy: 0.2614
- The information below is about HL_4V90_033
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
7OLD|1|5|G|31
7OLD|1|5|C|32
7OLD|1|5|U|33
7OLD|1|5|U|34
7OLD|1|5|U|35
7OLD|1|5|C|36
7OLD|1|5|A|37
7OLD|1|5|C|38
7OLD|1|5|C|39
Current chains
- Chain 5
- pe/E tRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain B
- HABP4_PAI-RBP1 domain-containing protein
- Chain SP
- 40S ribosomal protein s15-like protein
- Chain SQ
- 40S ribosomal protein S16-like protein
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