HL_7OLD_120

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGGCAACG

Length

8 nucleotides

Bulged bases

7OLD|1|2|A|1698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OLD_120 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.3452

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7OLD|1|2|C|1693
7OLD|1|2|G|1694
7OLD|1|2|G|1695
7OLD|1|2|C|1696
7OLD|1|2|A|1697
7OLD|1|2|A|1698
7OLD|1|2|C|1699
7OLD|1|2|G|1700

Current chains

Chain 2

18S rRNA

Nearby chains