HL_7OOD_008

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OOD_008 not in the Motif Atlas

Geometric match to HL_7RQB_008

Geometric discrepancy: 0.1828

The information below is about HL_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67216.7

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

9

Unit IDs

7OOD|1|3|U|250
7OOD|1|3|G|251
7OOD|1|3|G|252
7OOD|1|3|C|253
7OOD|1|3|G|254
7OOD|1|3|A|255
7OOD|1|3|G|256

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L35

Chain k

50S ribosomal protein L15