HL_7OOD_009

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCAUUAGA

Length

8 nucleotides

Bulged bases

7OOD|1|3|A|283, 7OOD|1|3|U|285, 7OOD|1|3|G|287

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OOD_009 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2286

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

7OOD|1|3|U|281
7OOD|1|3|C|282
7OOD|1|3|A|283
7OOD|1|3|U|284
7OOD|1|3|U|285
7OOD|1|3|A|286
7OOD|1|3|G|287
7OOD|1|3|A|288

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L9

Chain v

50S ribosomal protein L28