HL_7OOD_020

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUAAAAG

Length

7 nucleotides

Bulged bases

7OOD|1|3|A|681

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OOD_020 not in the Motif Atlas

Geometric match to HL_7RQB_021

Geometric discrepancy: 0.2408

The information below is about HL_7RQB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

7OOD|1|3|U|677
7OOD|1|3|U|678
7OOD|1|3|A|679
7OOD|1|3|A|680
7OOD|1|3|A|681
7OOD|1|3|A|682
7OOD|1|3|G|683

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L35

Chain z

50S ribosomal protein L33 1