HL_7OOD_028

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

7OOD|1|3|A|1105

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OOD_028 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.5793

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7OOD|1|3|C|1099
7OOD|1|3|U|1100
7OOD|1|3|U|1101
7OOD|1|3|A|1102
7OOD|1|3|G|1103
7OOD|1|3|A|1104
7OOD|1|3|A|1105
7OOD|1|3|G|1106
7OOD|1|3|C|1107
7OOD|1|3|A|1108
7OOD|1|3|G|1109

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain h

50S ribosomal protein L11