HL_7OOD_031

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OOD_031 not in the Motif Atlas

Geometric match to HL_7A0S_031

Geometric discrepancy: 0.174

The information below is about HL_7A0S_031

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

7OOD|1|3|C|1252
7OOD|1|3|G|1253
7OOD|1|3|U|1254
7OOD|1|3|G|1255
7OOD|1|3|A|1256
7OOD|1|3|G|1257

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain k

50S ribosomal protein L15

Chain p

50S ribosomal protein L20

Chain q

50S ribosomal protein L21