HL_7OOD_035

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

7OOD|1|3|U|1424, 7OOD|1|3|U|1425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OOD_035 not in the Motif Atlas

Geometric match to HL_7RQB_036

Geometric discrepancy: 0.1542

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7OOD|1|3|G|1417
7OOD|1|3|U|1418
7OOD|1|3|U|1419
7OOD|1|3|A|1420
7OOD|1|3|A|1421
7OOD|1|3|U|1422
7OOD|1|3|A|1423
7OOD|1|3|U|1424
7OOD|1|3|U|1425
7OOD|1|3|C|1426

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain s

50S ribosomal protein L23