HL_7OOD_040

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAACACAC

Length

8 nucleotides

Bulged bases

7OOD|1|3|A|1648, 7OOD|1|3|A|1650, 7OOD|1|3|A|1652

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OOD_040 not in the Motif Atlas

Geometric match to HL_7RQB_040

Geometric discrepancy: 0.2314

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

7OOD|1|3|G|1646
7OOD|1|3|A|1647
7OOD|1|3|A|1648
7OOD|1|3|C|1649
7OOD|1|3|A|1650
7OOD|1|3|C|1651
7OOD|1|3|A|1652
7OOD|1|3|C|1653

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L34

Chain m

50S ribosomal protein L17

Chain r

50S ribosomal protein L22