HL_7OOD_049

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUAAAUUC

Length

9 nucleotides

Bulged bases

7OOD|1|3|U|1962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OOD_049 not in the Motif Atlas

Geometric match to HL_7RQB_049

Geometric discrepancy: 0.2009

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

7OOD|1|3|G|1956
7OOD|1|3|G|1957
7OOD|1|3|U|1958
7OOD|1|3|A|1959
7OOD|1|3|A|1960
7OOD|1|3|A|1961
7OOD|1|3|U|1962
7OOD|1|3|U|1963
7OOD|1|3|C|1964

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain j

50S ribosomal protein L14