HL_7OOD_053

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

7OOD|1|3|G|2258

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OOD_053 not in the Motif Atlas

Geometric match to HL_7A0S_052

Geometric discrepancy: 0.1491

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

7OOD|1|3|C|2256
7OOD|1|3|U|2257
7OOD|1|3|G|2258
7OOD|1|3|G|2259
7OOD|1|3|G|2260
7OOD|1|3|G|2261
7OOD|1|3|C|2262
7OOD|1|3|G|2263
7OOD|1|3|G|2264

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain l

50S ribosomal protein L16

Chain u

50S ribosomal protein L27