HL_7OOD_054

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

7OOD|1|3|A|2276, 7OOD|1|3|C|2283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OOD_054 not in the Motif Atlas

Geometric match to HL_4WF9_050

Geometric discrepancy: 0.1091

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

7OOD|1|3|C|2272
7OOD|1|3|U|2273
7OOD|1|3|A|2274
7OOD|1|3|A|2275
7OOD|1|3|A|2276
7OOD|1|3|A|2277
7OOD|1|3|G|2278
7OOD|1|3|G|2279
7OOD|1|3|U|2280
7OOD|1|3|A|2281
7OOD|1|3|A|2282
7OOD|1|3|C|2283
7OOD|1|3|G|2284

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain l

50S ribosomal protein L16

Chain u

50S ribosomal protein L27