HL_7OOD_059

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGUAUGGAAU

Length

10 nucleotides

Bulged bases

7OOD|1|3|U|2414

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OOD_059 not in the Motif Atlas

Geometric match to HL_7RQB_059

Geometric discrepancy: 0.1403

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

7OOD|1|3|A|2412
7OOD|1|3|G|2413
7OOD|1|3|U|2414
7OOD|1|3|A|2415
7OOD|1|3|U|2416
7OOD|1|3|G|2417
7OOD|1|3|G|2418
7OOD|1|3|A|2419
7OOD|1|3|A|2420
7OOD|1|3|U|2421

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain k

50S ribosomal protein L15