HL_7OOD_067

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AAAGACGAU

Length

9 nucleotides

Bulged bases

7OOD|1|3|A|2824

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OOD_067 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.1888

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7OOD|1|3|A|2823
7OOD|1|3|A|2824
7OOD|1|3|A|2825
7OOD|1|3|G|2826
7OOD|1|3|A|2827
7OOD|1|3|C|2828
7OOD|1|3|G|2829
7OOD|1|3|A|2830
7OOD|1|3|U|2831

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L3

Chain m

50S ribosomal protein L17