HL_7OOD_069
3D structure
- PDB id
- 7OOD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CAUUUCG
- Length
- 7 nucleotides
- Bulged bases
- 7OOD|1|4|U|39
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OOD_069 not in the Motif Atlas
- Geometric match to HL_5NFV_001
- Geometric discrepancy: 0.0981
- The information below is about HL_5NFV_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_69752.4
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 7
Unit IDs
7OOD|1|4|C|36
7OOD|1|4|A|37
7OOD|1|4|U|38
7OOD|1|4|U|39
7OOD|1|4|U|40
7OOD|1|4|C|41
7OOD|1|4|G|42
Current chains
- Chain 4
- 5S ribosomal RNA
Nearby chains
- Chain 3
- Large subunit ribosomal RNA; LSU rRNA
- Chain d
- 50S ribosomal protein L5
- Chain n
- 50S ribosomal protein L18
- Chain x
- 50S ribosomal protein L31
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