HL_7OPE_015

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAACAGCC

Length

9 nucleotides

Bulged bases

7OPE|1|A|A|373, 7OPE|1|A|A|374, 7OPE|1|A|C|375

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OPE_015 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1038

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

7OPE|1|A|G|371
7OPE|1|A|U|372
7OPE|1|A|A|373
7OPE|1|A|A|374
7OPE|1|A|C|375
7OPE|1|A|A|376
7OPE|1|A|G|377
7OPE|1|A|C|378
7OPE|1|A|C|379

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L4

Chain Y

50S ribosomal protein L24