HL_7OPE_029

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAUAAGA

Length

8 nucleotides

Bulged bases

7OPE|1|A|U|1004, 7OPE|1|A|G|1007

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OPE_029 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.143

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

7OPE|1|A|U|1001
7OPE|1|A|G|1002
7OPE|1|A|A|1003
7OPE|1|A|U|1004
7OPE|1|A|A|1005
7OPE|1|A|A|1006
7OPE|1|A|G|1007
7OPE|1|A|A|1008

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain Q

50S ribosomal protein L16