HL_7OPE_031

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

7OPE|1|A|A|1116

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OPE_031 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.2258

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7OPE|1|A|C|1110
7OPE|1|A|U|1111
7OPE|1|A|U|1112
7OPE|1|A|A|1113
7OPE|1|A|G|1114
7OPE|1|A|A|1115
7OPE|1|A|A|1116
7OPE|1|A|G|1117
7OPE|1|A|C|1118
7OPE|1|A|A|1119
7OPE|1|A|G|1120

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

Rqc2 homolog RqcH

Chain K

50S ribosomal protein L11