HL_7OPE_049

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OPE_049 not in the Motif Atlas

Geometric match to HL_8P9A_179

Geometric discrepancy: 0.3966

The information below is about HL_8P9A_179

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_65256.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

7OPE|1|A|G|1939
7OPE|1|A|U|1940
7OPE|1|A|A|1947
7OPE|1|A|A|1948
7OPE|1|A|C|1949

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

Transfer RNA; tRNA