HL_7OPE_050

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

7OPE|1|A|U|1984

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OPE_050 not in the Motif Atlas

Homologous match to HL_4WF9_046

Geometric discrepancy: 0.1317

The information below is about HL_4WF9_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61418.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

7OPE|1|A|G|1978
7OPE|1|A|G|1979
7OPE|1|A|U|1980
7OPE|1|A|A|1981
7OPE|1|A|A|1982
7OPE|1|A|G|1983
7OPE|1|A|U|1984
7OPE|1|A|U|1985
7OPE|1|A|C|1986

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L14