HL_7OPE_055

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

7OPE|1|A|A|2297, 7OPE|1|A|C|2304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OPE_055 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0968

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

7OPE|1|A|C|2293
7OPE|1|A|U|2294
7OPE|1|A|A|2295
7OPE|1|A|A|2296
7OPE|1|A|A|2297
7OPE|1|A|A|2298
7OPE|1|A|G|2299
7OPE|1|A|G|2300
7OPE|1|A|U|2301
7OPE|1|A|A|2302
7OPE|1|A|A|2303
7OPE|1|A|C|2304
7OPE|1|A|G|2305

Current chains

Chain A

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L16

Chain a

50S ribosomal protein L27