HL_7OPE_057
3D structure
- PDB id
- 7OPE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGUAAAGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OPE_057 not in the Motif Atlas
- Homologous match to HL_5J7L_189
- Geometric discrepancy: 0.1286
- The information below is about HL_5J7L_189
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 24
Unit IDs
7OPE|1|A|U|2353
7OPE|1|A|G|2354
7OPE|1|A|U|2355
7OPE|1|A|A|2356
7OPE|1|A|A|2357
7OPE|1|A|A|2358
7OPE|1|A|G|2359
7OPE|1|A|G|2360
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain H
- 50S ribosomal protein L5
- Chain Q
- 50S ribosomal protein L16
- Chain a
- 50S ribosomal protein L27
Coloring options: