HL_7OPE_067

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7OPE|1|A|G|2780, 7OPE|1|A|C|2784

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OPE_067 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1112

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7OPE|1|A|C|2774
7OPE|1|A|U|2775
7OPE|1|A|G|2776
7OPE|1|A|A|2777
7OPE|1|A|A|2778
7OPE|1|A|A|2779
7OPE|1|A|G|2780
7OPE|1|A|C|2781
7OPE|1|A|A|2782
7OPE|1|A|U|2783
7OPE|1|A|C|2784
7OPE|1|A|U|2785
7OPE|1|A|A|2786
7OPE|1|A|A|2787
7OPE|1|A|G|2788

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L6

Chain N

50S ribosomal protein L13

Chain j

50S ribosomal protein L36