3D structure

PDB id
7OSA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GUCAUCAGC
Length
9 nucleotides
Bulged bases
7OSA|1|18S|G|1601
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7OSA_034 not in the Motif Atlas
Homologous match to HL_8P9A_223
Geometric discrepancy: 0.1057
The information below is about HL_8P9A_223
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7OSA|1|18S|G|1594
7OSA|1|18S|U|1595
7OSA|1|18S|C|1596
7OSA|1|18S|A|1597
7OSA|1|18S|U|1598
7OSA|1|18S|C|1599
7OSA|1|18S|A|1600
7OSA|1|18S|G|1601
7OSA|1|18S|C|1602

Current chains

Chain 18S
18S rRNA

Nearby chains

Chain eS19
40S ribosomal protein S19-A
Chain uS10
40S ribosomal protein S20
Chain uS14
HLJ1_G0030400.mRNA.1.CDS.1
Chain uS9
BJ4_G0008010.mRNA.1.CDS.1

Coloring options:


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