RNA 3D Hub //

7OSA Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7OSA_0011/18S/7:17No text annotation
homologous
HL_8C3A_192
NA
HL_7OSA_0031/18S/154:160GNRA related
homologous
HL_8C3A_194
NA
HL_7OSA_0051/18S/243:250T-loop with 1 bulged base
homologous
HL_8C3A_197
NA
HL_7OSA_0061/18S/276:279Mini UNCG
homologous
HL_8P9A_196
HL_90436.3
HL_7OSA_0071/18S/330:338GNRA related
homologous
HL_8C3A_199
NA
HL_7OSA_0081/18S/368:373No text annotation
homologous
HL_8P9A_198
HL_93535.2
HL_7OSA_0091/18S/393:404No text annotation
homologous
HL_8P9A_199
HL_86432.1
HL_7OSA_0101/18S/414:419UNCG
homologous
HL_8P9A_200
HL_61337.3
HL_7OSA_0111/18S/450:456No text annotation
homologous
HL_8P9A_201
HL_89167.2
HL_7OSA_1261/18S/491:496No text annotation
HL_7OSA_0131/18S/520:532No text annotation
homologous
HL_8P9A_203
HL_68749.1
HL_7OSA_0141/18S/569:574GNRA variation
homologous
HL_8C3A_206
NA
HL_7OSA_0171/18S/764:772No text annotation
homologous
HL_8C3A_208
NA
HL_7OSA_1271/18S/777:783No text annotation
HL_7OSA_1281/18S/900:909No text annotation
homologous
HL_8P9A_209
HL_38491.2
HL_7OSA_0211/18S/937:942GNRA
homologous
HL_8C3A_212
NA
HL_7OSA_0221/18S/997:1007No text annotation
homologous
HL_8C3A_213
NA
HL_7OSA_0231/18S/1055:1064No text annotation
HL_7OSA_0241/18S/1084:1089GNRA
homologous
HL_8C3A_215
NA
HL_7OSA_0251/18S/1121:1126GNRA
homologous
HL_8P9A_214
HL_34789.3
HL_7OSA_0261/18S/1188:1197No text annotation
homologous
HL_8C3A_217
NA
HL_7OSA_0271/18S/1238:1247Anticodon loop related
geometric
HL_4V88_213
NA
HL_7OSA_0281/18S/1296:1301GNRA
homologous
HL_8C3A_219
NA
HL_7OSA_0291/18S/1309:1316T-loop related
homologous
HL_8C3A_220
NA
HL_7OSA_0301/18S/1359:1364No text annotation
homologous
HL_8C3A_221
NA
HL_7OSA_0311/18S/1396:1402GNRA
geometric
HL_6YMC_001
HL_34789.3
HL_7OSA_0321/18S/1501:1506GNRA
homologous
HL_8C3A_223
NA
HL_7OSA_0331/18S/1550:1561No text annotation
homologous
HL_8C3A_224
NA
HL_7OSA_0341/18S/1594:1602No text annotation
homologous
HL_8P9A_223
NA
HL_7OSA_1181/18S/1686:1715No text annotation
HL_7OSA_0351/18S/1690:1711No text annotation
homologous
HL_8P9A_224
HL_52616.1
HL_7OSA_0361/18S/1778:1783GNRA variation
homologous
HL_8C3A_227
NA
HL_7OSA_0371/25S/38:45No text annotation
homologous
HL_8P9A_113
HL_48677.1
HL_7OSA_0381/25S/69:74No text annotation
homologous
HL_8P9A_114
HL_51020.2
HL_7OSA_0391/25S/90:96No text annotation
homologous
HL_8P9A_115
HL_76371.2
HL_7OSA_0401/25S/132:136No text annotation
geometric
HL_5TBW_004
NA
HL_7OSA_0411/25S/194:201T-loop with 1 bulged base
homologous
HL_8P9A_117
HL_13999.3
HL_7OSA_0421/25S/208:212No text annotation
geometric
HL_8C3A_006
NA
HL_7OSA_1291/25S/216:224T-loop with unstacked turn
homologous
HL_8P9A_119
HL_27670.4
HL_7OSA_0441/25S/278:287T-loop related
homologous
HL_8P9A_120
HL_63894.2
HL_7OSA_0451/25S/303:312No text annotation
homologous
HL_8P9A_121
HL_00911.2
HL_7OSA_0461/25S/357:362GNRA
homologous
HL_8P9A_122
HL_34789.3
HL_7OSA_0471/25S/382:387GNRA
homologous
HL_8C3A_011
NA
HL_7OSA_1301/25S/542:549No text annotation
HL_7OSA_0491/25S/599:604GNRA
homologous
HL_8P9A_125
HL_34789.3
HL_7OSA_0501/25S/640:649T-loop with 2 stacked bulged bases
homologous
HL_8P9A_126
HL_33597.3
HL_7OSA_0511/25S/686:694No text annotation
homologous
HL_8C3A_015
NA
HL_7OSA_0521/25S/707:712GNRA
homologous
HL_8C3A_016
NA
HL_7OSA_0531/25S/732:737GNRA
homologous
HL_8P9A_129
HL_34789.3
HL_7OSA_0541/25S/763:768No text annotation
homologous
HL_8C3A_018
NA
HL_7OSA_0551/25S/844:849GNRA
homologous
HL_8P9A_131
HL_34789.3
HL_7OSA_0561/25S/876:885No text annotation
homologous
HL_8P9A_132
HL_50204.1
HL_7OSA_0571/25S/910:918No text annotation
homologous
HL_8P9A_133
HL_92598.1
HL_7OSA_0581/25S/958:963No text annotation
homologous
HL_8P9A_134
HL_27530.1
HL_7OSA_1311/25S/1013:1037No text annotation
HL_7OSA_0601/25S/1074:1084No text annotation
HL_7OSA_0611/25S/1126:1132GNRA
homologous
HL_8P9A_137
HL_34789.3
HL_7OSA_0621/25S/1148:1155No text annotation
homologous
HL_8P9A_138
HL_47171.1
HL_7OSA_0631/25S/1238:1250No text annotation
geometric
HL_4TUE_219
NA
HL_7OSA_0641/25S/1267:1274GNRA wlth tandem sheared
homologous
HL_8P9A_140
HL_98423.3
HL_7OSA_0651/25S/1347:1357No text annotation
homologous
HL_8P9A_141
HL_29762.1
HL_7OSA_0661/25S/1403:1408GNRA
homologous
HL_8P9A_142
HL_34789.3
HL_7OSA_0671/25S/1462:1470T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_7OSA_0681/25S/1506:1512Pseudoknot geometry with 3' bulge
homologous
HL_8P9A_144
HL_49081.1
HL_7OSA_0691/25S/1544:1549GNRA variation
homologous
HL_8C3A_033
NA
HL_7OSA_0711/25S/1599:1608No text annotation
homologous
HL_8C3A_035
NA
HL_7OSA_0721/25S/1634:1639GNRA
homologous
HL_8P9A_147
HL_34789.3
HL_7OSA_0731/25S/1680:1688No text annotation
homologous
HL_8C3A_037
NA
HL_7OSA_0741/25S/1719:1725No text annotation
homologous
HL_8P9A_149
HL_97067.1
HL_7OSA_0751/25S/1757:1768No text annotation
HL_7OSA_0761/25S/1792:1796Mini UNCG
homologous
HL_8P9A_151
HL_90436.3
HL_7OSA_0771/25S/1844:1851No text annotation
homologous
HL_8P9A_152
HL_28592.2
HL_7OSA_0781/25S/1862:1868GNRA
homologous
HL_8P9A_153
HL_34789.3
HL_7OSA_0791/25S/1923:1928UNCG
homologous
HL_8P9A_154
HL_61337.3
HL_7OSA_0811/25S/2110:2114No text annotation
homologous
HL_8P9A_156
HL_16651.1
HL_7OSA_0821/25S/2135:2145No text annotation
homologous
HL_8C3A_046
NA
HL_7OSA_0831/25S/2164:2170GNRA
homologous
HL_8C3A_047
NA
HL_7OSA_0841/25S/2220:2225GNRA
homologous
HL_8P9A_159
HL_34789.3
HL_7OSA_0851/25S/2253:2263No text annotation
homologous
HL_8C3A_049
NA
HL_7OSA_0861/25S/2292:2300No text annotation
homologous
HL_8C3A_050
NA
HL_7OSA_0871/25S/2369:2378No text annotation
homologous
HL_8C3A_051
NA
HL_7OSA_0891/25S/2536:2543No text annotation
HL_7OSA_0901/25S/2568:2573No text annotation
geometric
HL_8C3A_006
NA
HL_7OSA_0911/25S/2616:2624No text annotation
homologous
HL_8P9A_165
HL_11974.2
HL_7OSA_0921/25S/2633:2645No text annotation
homologous
HL_8P9A_166
HL_02042.1
HL_7OSA_0931/25S/2673:2681No text annotation
homologous
HL_8C3A_057
NA
HL_7OSA_0941/25S/2693:2700Pseudoknot geometry
homologous
HL_8P9A_168
HL_52651.2
HL_7OSA_0951/25S/2724:2732No text annotation
homologous
HL_8P9A_169
HL_15296.1
HL_7OSA_0961/25S/2744:2749GNRA
homologous
HL_8P9A_170
HL_34789.3
HL_7OSA_0971/25S/2776:2784Pseudoknot geometry
homologous
HL_8C3A_061
NA
HL_7OSA_0981/25S/2840:2848No text annotation
homologous
HL_8P9A_172
HL_52011.1
HL_7OSA_0991/25S/2897:2904GNRA variation
homologous
HL_8P9A_173
HL_46665.2
HL_7OSA_1001/25S/2920:2926No text annotation
homologous
HL_8P9A_174
HL_48677.1
HL_7OSA_1011/25S/2963:2968GNRA
homologous
HL_8P9A_175
HL_34789.3
HL_7OSA_1021/25S/3025:3030GNRA
homologous
HL_8P9A_176
HL_34789.3
HL_7OSA_1031/25S/3068:3073Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_7OSA_1041/25S/3110:3124No text annotation
homologous
HL_8C3A_068
NA
HL_7OSA_1051/25S/3194:3197No text annotation
geometric
HL_6U8D_003
HL_32346.6
HL_7OSA_1061/25S/3240:3247No text annotation
homologous
HL_8P9A_180
HL_31089.1
HL_7OSA_1071/25S/3303:3311No text annotation
homologous
HL_8P9A_181
HL_37889.1
HL_7OSA_1081/25S/3349:3356No text annotation
HL_7OSA_1221/58S/47:56Pseudoknot with intercalation
geometric
HL_5TBW_230
NA
HL_7OSA_1231/58S/68:91No text annotation
homologous
HL_8C3A_075
NA
HL_7OSA_1091/58S/73:78No text annotation
HL_7OSA_1101/58S/108:114No text annotation
homologous
HL_8C3A_076
NA
HL_7OSA_1111/58S/124:129No text annotation
homologous
HL_8P9A_189
HL_79745.1
HL_7OSA_1241/AB/32:45No text annotation
homologous
HL_8C3A_228
NA
HL_7OSA_1121/AB/36:41No text annotation
geometric
HL_5TBW_185
NA
HL_7OSA_1131/AB/88:93GNRA
homologous
HL_8C3A_074
NA
HL_7OSA_1251/PSIT/13:23tRNA D-loop
homologous
HL_3WQY_001
HL_57684.1
HL_7OSA_1151/PSIT/32:40tRNA anticodon loop
homologous
HL_9DFC_104
NA
HL_7OSA_1321/PSIT/54:62T-loop with 2 stacked bulged bases
homologous
HL_8WND_005
HL_33597.3

Problematic loops

#loop idProblemSequence
HL_7OSA_002No text annotation
HL_7OSA_004No text annotation
HL_7OSA_012No text annotation
HL_7OSA_015No text annotation
HL_7OSA_016No text annotation
HL_7OSA_018No text annotation
HL_7OSA_019No text annotation
HL_7OSA_020No text annotation
HL_7OSA_117No text annotation
HL_7OSA_119No text annotation
HL_7OSA_043No text annotation
HL_7OSA_048No text annotation
HL_7OSA_120No text annotation
HL_7OSA_059No text annotation
HL_7OSA_070No text annotation
HL_7OSA_080No text annotation
HL_7OSA_088No text annotation
HL_7OSA_121tRNA D-loop
HL_7OSA_114No text annotation
HL_7OSA_116No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7OSA_0011/18S/24:26,
1/18S/600:601		Single bulged C
homologous
IL_8P9A_373
IL_05642.2
IL_7OSA_0021/18S/35:37,
1/18S/471:473		Isolated non-canonical cWW pair
homologous
IL_8C3A_393
NA
IL_7OSA_0031/18S/37:41,
1/18S/466:471		Triple sheared related
homologous
IL_8C3A_394
NA
IL_7OSA_0041/18S/42:48,
1/18S/431:433		No text annotation
geometric
IL_4V88_387
NA
IL_7OSA_0051/18S/50:52,
1/18S/428:429		Minor groove platform
homologous
IL_8P9A_377
IL_34520.3
IL_7OSA_0061/18S/58:63,
1/18S/87:89		No text annotation
homologous
IL_8P9A_378
IL_61299.6
IL_7OSA_0071/18S/64:69,
1/18S/82:86		No text annotation
homologous
IL_8C3A_398
NA
IL_7OSA_0081/18S/109:112,
1/18S/302:305		Tandem non-canonical cWW pairs
homologous
IL_8C3A_399
NA
IL_7OSA_0091/18S/113:116,
1/18S/300:301		Multiple bulged bases
homologous
IL_8P9A_381
IL_71421.2
IL_7OSA_0101/18S/117:122,
1/18S/295:299		No text annotation
homologous
IL_8P9A_382
IL_31545.1
IL_7OSA_2301/18S/142:149,
1/18S/165:172		No text annotation
homologous
IL_8P9A_383
IL_24485.1
IL_7OSA_0121/18S/150:152,
1/18S/162:164		No text annotation
homologous
IL_8P9A_384
IL_87720.1
IL_7OSA_2521/18S/204:206,
1/18S/259:263		No text annotation
homologous
IL_8P9A_386
IL_36931.2
IL_7OSA_2531/18S/206:208,
1/18S/257:259		Isolated non-canonical cWW pair
homologous
IL_8CRE_404
IL_71625.2
IL_7OSA_0151/18S/265:267,
1/18S/288:289		Single bulged A
homologous
IL_8P9A_388
IL_14190.2
IL_7OSA_2311/18S/270:273,
1/18S/283:285		No text annotation
homologous
IL_8P9A_389
IL_15698.5
IL_7OSA_2321/18S/275:276,
1/18S/279:281		Single bulged U
homologous
IL_8C3A_409
NA
IL_7OSA_0181/18S/311:316,
1/18S/348:355		Kink-turn with non-sequential stacking
homologous
IL_8C3A_410
NA
IL_7OSA_0191/18S/318:323,
1/18S/345:346		No text annotation
homologous
IL_8P9A_392
IL_01372.1
IL_7OSA_0201/18S/363:365,
1/18S/376:381		No text annotation
homologous
IL_8C3A_412
NA
IL_7OSA_0211/18S/389:391,
1/18S/406:408		Isolated cWH basepair
homologous
IL_8P9A_394
IL_10892.2
IL_7OSA_0221/18S/411:413,
1/18S/420:422		Isolated non-canonical cWW pair
homologous
IL_8C3A_414
NA
IL_7OSA_0231/18S/439:441,
1/18S/463:464		Single bulged U
homologous
IL_8P9A_396
IL_97561.3
IL_7OSA_2541/18S/443:447,
1/18S/460:461		C-loop
homologous
IL_8P9A_397
IL_26900.1
IL_7OSA_2551/18S/447:448,
1/18S/458:460		Single bulged G
homologous
IL_8P9A_398
IL_28408.2
IL_7OSA_0251/18S/481:482,
1/18S/505:507		No text annotation
IL_7OSA_0261/18S/517:520,
1/18S/532:535		Double sheared
geometric
IL_6YL5_010
IL_58355.2
IL_7OSA_0271/18S/550:557,
1/18S/587:588		SSU/LSU pseudoknot
homologous
IL_8P9A_402
IL_11411.1
IL_7OSA_0281/18S/557:559,
1/18S/586:587		Single bulged U
homologous
IL_8C3A_424
NA
IL_7OSA_0291/18S/562:568,
1/18S/575:583		No text annotation
homologous
IL_8P9A_404
IL_52042.1
IL_7OSA_0301/18S/616:622,
1/18S/1104:1105		No text annotation
homologous
IL_8C3A_426
NA
IL_7OSA_0311/18S/624:626,
1/18S/973:975		Isolated non-canonical cWW pair
homologous
IL_8P9A_406
IL_01003.3
IL_7OSA_0321/18S/627:631,
1/18S/968:972		tSH-tHW-tHS
homologous
IL_8P9A_407
IL_05821.1
IL_7OSA_2331/18S/644:646,
1/18S/689:690		Single stack bend
geometric
IL_5TBW_101
NA
IL_7OSA_2561/18S/646:649,
1/18S/685:689		No text annotation
geometric
IL_4DB2_001
IL_61988.1
IL_7OSA_0351/18S/746:747,
1/18S/802:805		Major groove minor groove platform; mini C-loop
homologous
IL_8C3A_430
NA
IL_7OSA_0361/18S/748:750,
1/18S/799:801		Isolated non-canonical cWW pair
homologous
IL_8C3A_431
NA
IL_7OSA_0371/18S/751:759,
1/18S/791:798		No text annotation
homologous
IL_8C3A_503
NA
IL_7OSA_2341/18S/817:824,
1/18S/848:854		No text annotation
IL_7OSA_0391/18S/865:866,
1/18S/962:965		Major groove platform; stack outside cWW
homologous
IL_8P9A_417
IL_74641.2
IL_7OSA_0401/18S/868:870,
1/18S/957:960		Isolated non-canonical cWW pair
homologous
IL_8P9A_418
IL_01003.3
IL_7OSA_0411/18S/871:874,
1/18S/953:956		Tandem non-canonical cWW pairs
homologous
IL_8P9A_419
IL_15225.2
IL_7OSA_0421/18S/874:878,
1/18S/950:953		Tandem non-canonical cWW pairs
homologous
IL_8P9A_420
IL_15225.2
IL_7OSA_0431/18S/885:888,
1/18S/924:927		Tandem non-canonical cWW pairs
homologous
IL_8P9A_421
IL_15225.2
IL_7OSA_0441/18S/893:895,
1/18S/917:919		Isolated non-canonical cWW pair
geometric
IL_4V88_433
NA
IL_7OSA_2351/18S/893:899,
1/18S/910:919		No text annotation
homologous
IL_8P9A_422
IL_57741.1
IL_7OSA_0451/18S/895:899,
1/18S/910:917		Kink-turn
geometric
IL_4V88_434
NA
IL_7OSA_0461/18S/985:990,
1/18S/1014:1016		No text annotation
homologous
IL_8P9A_423
IL_31359.1
IL_7OSA_0471/18S/990:994,
1/18S/1010:1014		tSH-tHW-tHS
homologous
IL_8P9A_424
IL_05821.1
IL_7OSA_0481/18S/1034:1036,
1/18S/1095:1101		No text annotation
homologous
IL_8P9A_425
IL_82706.2
IL_7OSA_0491/18S/1041:1044,
1/18S/1074:1077		Tandem non-canonical cWW pairs
homologous
IL_8C3A_444
NA
IL_7OSA_0501/18S/1051:1053,
1/18S/1066:1067		Single bulged U
geometric
IL_3TZR_002
IL_97561.3
IL_7OSA_0511/18S/1111:1118,
1/18S/1129:1134		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_8C3A_446
NA
IL_7OSA_0521/18S/1146:1147,
1/18S/1630:1632		Single bulged A
homologous
IL_8C3A_447
NA
IL_7OSA_0531/18S/1149:1151,
1/18S/1627:1628		Single bulged G
homologous
IL_8C3A_448
NA
IL_7OSA_0541/18S/1157:1160,
1/18S/1617:1621		C-loop
homologous
IL_8C3A_449
NA
IL_7OSA_0551/18S/1173:1175,
1/18S/1464:1466		Isolated non-canonical cWW pair
homologous
IL_8P9A_432
IL_01003.3
IL_7OSA_0561/18S/1178:1179,
1/18S/1459:1461		Minor groove platform
homologous
IL_8P9A_433
IL_34520.3
IL_7OSA_0571/18S/1213:1215,
1/18S/1448:1450		Isolated non-canonical cWW pair
homologous
IL_8C3A_452
NA
IL_7OSA_0581/18S/1223:1233,
1/18S/1252:1260		No text annotation
IL_7OSA_0591/18S/1233:1236,
1/18S/1249:1252		No text annotation
IL_7OSA_0601/18S/1268:1270,
1/18S/1440:1441		Single bulged U
homologous
IL_8C3A_455
NA
IL_7OSA_2371/18S/1272:1276,
1/18S/1436:1438		No text annotation
homologous
IL_8P9A_438
IL_82453.1
IL_7OSA_2381/18S/1276:1278,
1/18S/1430:1436		No text annotation
homologous
IL_8P9A_440
IL_34117.1
IL_7OSA_0621/18S/1280:1281,
1/18S/1426:1428		Single bulged A
homologous
IL_8C3A_458
NA
IL_7OSA_0631/18S/1290:1292,
1/18S/1323:1325		Isolated non-canonical cWW pair
homologous
IL_8C3A_459
NA
IL_7OSA_0641/18S/1306:1308,
1/18S/1317:1318		Minor groove platform
homologous
IL_8C3A_460
NA
IL_7OSA_0651/18S/1339:1342,
1/18S/1383:1385		Isolated non-canonical cWW pair
homologous
IL_8P9A_444
IL_01003.3
IL_7OSA_2571/18S/1345:1348,
1/18S/1377:1380		No text annotation
homologous
IL_8P9A_445
IL_78800.2
IL_7OSA_0671/18S/1352:1354,
1/18S/1369:1373		No text annotation
IL_7OSA_2581/18S/1389:1391,
1/18S/1407:1412		No text annotation
geometric
IL_8P9A_447
IL_94684.1
IL_7OSA_0691/18S/1480:1487,
1/18S/1519:1527		No text annotation
homologous
IL_8P9A_448
IL_91698.1
IL_7OSA_0701/18S/1488:1494,
1/18S/1513:1518		180 degree turn
geometric
IL_4V88_460
NA
IL_7OSA_0711/18S/1495:1498,
1/18S/1509:1512		Tandem non-canonical cWW pairs
homologous
IL_8P9A_450
IL_76776.1
IL_7OSA_0721/18S/1540:1545,
1/18S/1566:1571		No text annotation
homologous
IL_8C3A_507
NA
IL_7OSA_0731/18S/1636:1638,
1/18S/1764:1767		No text annotation
homologous
IL_8P9A_452
IL_18228.1
IL_7OSA_0741/18S/1638:1641,
1/18S/1760:1764		No text annotation
homologous
IL_8P9A_453
IL_25873.2
IL_7OSA_0751/18S/1642:1644,
1/18S/1757:1759		Isolated non-canonical cWW pair
homologous
IL_8P9A_454
IL_01003.3
IL_7OSA_0761/18S/1644:1647,
1/18S/1753:1757		No text annotation
homologous
IL_8C3A_473
NA
IL_7OSA_0771/18S/1650:1652,
1/18S/1748:1750		Isolated non-canonical cWW pair
homologous
IL_8P9A_456
IL_01003.3
IL_7OSA_0781/18S/1653:1656,
1/18S/1744:1747		Double sheared
homologous
IL_8P9A_457
IL_58355.2
IL_7OSA_0791/18S/1656:1658,
1/18S/1743:1744		Single bulged U
homologous
IL_8P9A_458
IL_97561.3
IL_7OSA_0801/18S/1665:1667,
1/18S/1734:1736		Isolated non-canonical cWW pair
homologous
IL_8C3A_477
NA
IL_7OSA_0811/18S/1669:1672,
1/18S/1729:1732		Double sheared
homologous
IL_8P9A_460
IL_58355.2
IL_7OSA_0821/18S/1672:1674,
1/18S/1727:1729		Isolated non-canonical cWW pair
homologous
IL_8P9A_461
IL_01003.3
IL_7OSA_0831/18S/1675:1678,
1/18S/1723:1726		Tandem non-canonical cWW pairs
homologous
IL_8P9A_462
IL_71194.2
IL_7OSA_0841/18S/1678:1682,
1/18S/1719:1723		Triple sheared
homologous
IL_8C3A_480
NA
IL_7OSA_0851/18S/1686:1690,
1/18S/1711:1715		No text annotation
IL_7OSA_0861/25S/7:8,
1/58S/150:152		Single bulged C
homologous
IL_8P9A_231
IL_05642.2
IL_7OSA_0871/25S/13:15,
1/58S/144:145		Single bulged U
homologous
IL_8P9A_232
IL_97561.3
IL_7OSA_0881/25S/27:28,
1/25S/56:58		Single stack bend
homologous
IL_8P9A_233
IL_15011.2
IL_7OSA_0891/25S/31:38,
1/25S/45:53		tSH-tHW-tHH-tHS
homologous
IL_8P9A_234
IL_93502.1
IL_7OSA_0901/25S/82:89,
1/25S/97:103		8x7 Sarcin-Ricin; G-bulge
homologous
IL_8P9A_235
IL_53348.1
IL_7OSA_0911/25S/123:124,
1/25S/144:149		No text annotation
homologous
IL_8C3A_007
NA
IL_7OSA_0921/25S/125:127,
1/25S/141:143		Isolated non-canonical cWW pair
homologous
IL_8C3A_008
NA
IL_7OSA_2591/25S/163:165,
1/25S/257:258		Single stack bend
homologous
IL_8P9A_238
IL_15011.2
IL_7OSA_0941/25S/169:170,
1/25S/248:253		No text annotation
geometric
IL_5TBW_010
NA
IL_7OSA_2601/25S/177:178,
1/25S/238:241		No text annotation
IL_7OSA_0961/25S/189:191,
1/25S/204:205		Single bulged U
homologous
IL_8P9A_241
IL_97561.3
IL_7OSA_0971/25S/337:339,
1/58S/25:26		Single bulged A
homologous
IL_8C3A_014
NA
IL_7OSA_0981/25S/376:379,
1/25S/390:403		No text annotation
geometric
IL_5TBW_014
NA
IL_7OSA_0991/25S/404:410,
1/58S/13:19		No text annotation
homologous
IL_8P9A_244
IL_22311.1
IL_7OSA_1001/25S/429:431,
1/25S/628:630		Isolated non-canonical cWW pair
homologous
IL_8P9A_245
IL_71625.2
IL_7OSA_1021/25S/512:513,
1/25S/577:579		Single bulged A
homologous
IL_8P9A_246
IL_14190.2
IL_7OSA_1031/25S/517:525,
1/25S/567:573		No text annotation
homologous
IL_8P9A_247
IL_06606.1
IL_7OSA_1041/25S/531:538,
1/25S/553:561		No text annotation
homologous
IL_8P9A_248
IL_25001.1
IL_7OSA_1051/25S/668:670,
1/25S/792:794		Isolated non-canonical cWW pair
homologous
IL_8P9A_249
IL_01003.3
IL_7OSA_1061/25S/680:684,
1/25S/696:700		No text annotation
homologous
IL_8P9A_250
IL_87030.1
IL_7OSA_2431/25S/725:728,
1/25S/741:745		UAA/GAN variation
homologous
IL_8P9A_251
IL_45790.2
IL_7OSA_1081/25S/752:753,
1/25S/779:781		Single bulged A
homologous
IL_8P9A_252
IL_14190.2
IL_7OSA_1091/25S/755:756,
1/25S/775:777		Single bulged U
homologous
IL_8C3A_027
NA
IL_7OSA_1101/25S/758:763,
1/25S/768:773		No text annotation
homologous
IL_8P9A_254
IL_57885.2
IL_7OSA_1111/25S/803:805,
1/25S/938:940		Isolated non-canonical cWW pair
homologous
IL_8P9A_255
IL_01003.3
IL_7OSA_1121/25S/805:809,
1/25S/931:938		No text annotation
homologous
IL_8P9A_256
IL_73855.1
IL_7OSA_1131/25S/828:829,
1/25S/895:897		Single bulged A
homologous
IL_8C3A_031
NA
IL_7OSA_1141/25S/833:834,
1/25S/859:861		Single bulged G
homologous
IL_8P9A_257
IL_28408.2
IL_7OSA_1151/25S/834:838,
1/25S/855:859		Triple sheared
homologous
IL_8P9A_258
IL_15190.2
IL_7OSA_1161/25S/869:872,
1/25S/888:890		No text annotation
homologous
IL_8P9A_259
IL_36931.2
IL_7OSA_1171/25S/873:875,
1/25S/886:887		Single bulged U
homologous
IL_8P9A_260
IL_97561.3
IL_7OSA_1181/25S/907:909,
1/25S/919:923		No text annotation
homologous
IL_8P9A_261
IL_89509.1
IL_7OSA_1191/25S/954:956,
1/25S/965:967		Isolated non-canonical cWW pair
homologous
IL_8P9A_262
IL_71625.2
IL_7OSA_1201/25S/969:970,
1/25S/1111:1113		Single stack bend
homologous
IL_8P9A_263
IL_15011.2
IL_7OSA_1211/25S/977:982,
1/25S/1101:1104		No text annotation
IL_7OSA_1221/25S/983:985,
1/25S/1099:1100		Single bulged G
homologous
IL_8C3A_040
NA
IL_7OSA_1231/25S/991:997,
1/25S/1052:1058		7x7 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_8P9A_266
IL_94128.1
IL_7OSA_1241/25S/997:998,
1/25S/1050:1052		Minor groove platform
homologous
IL_8P9A_267
IL_34520.3
IL_7OSA_1251/25S/999:1004,
1/25S/1046:1049		C-loop with bulged stacked A's
homologous
IL_8P9A_268
IL_16301.1
IL_7OSA_1261/25S/1006:1009,
1/25S/1041:1044		No text annotation
homologous
IL_8C3A_481
NA
IL_7OSA_1271/25S/1009:1011,
1/25S/1039:1041		Isolated non-canonical cWW pair
homologous
IL_8P9A_270
IL_01003.3
IL_7OSA_1281/25S/1069:1071,
1/25S/1087:1089		Isolated non-canonical cWW pair
geometric
IL_3RW6_004
IL_01003.3
IL_7OSA_1291/25S/1120:1122,
1/25S/1136:1138		Isolated non-canonical cWW pair
homologous
IL_8P9A_274
IL_01003.3
IL_7OSA_1311/25S/1167:1171,
1/25S/1328:1332		UAA/GAN
homologous
IL_8P9A_276
IL_08938.1
IL_7OSA_1321/25S/1173:1180,
1/25S/1325:1326		SSU/LSU pseudoknot
homologous
IL_8P9A_277
IL_07396.1
IL_7OSA_1331/25S/1180:1182,
1/25S/1324:1325		Single bulged U
homologous
IL_8P9A_278
IL_97561.3
IL_7OSA_1341/25S/1187:1194,
1/25S/1314:1319		No text annotation
homologous
IL_8C3A_054
NA
IL_7OSA_1351/25S/1194:1205,
1/25S/1299:1314		No text annotation
homologous
IL_8C3A_055
NA
IL_7OSA_1361/25S/1207:1209,
1/25S/1296:1297		Single bulged U
homologous
IL_8P9A_281
IL_97561.3
IL_7OSA_1371/25S/1218:1226,
1/25S/1283:1287		Kink-turn
homologous
IL_8C3A_057
NA
IL_7OSA_1381/25S/1234:1238,
1/25S/1250:1254		No text annotation
homologous
IL_8P9A_283
IL_16218.3
IL_7OSA_1391/25S/1262:1266,
1/25S/1275:1277		No text annotation
homologous
IL_8P9A_284
IL_36931.2
IL_7OSA_1401/25S/1376:1378,
1/25S/1428:1431		No text annotation
homologous
IL_8P9A_285
IL_42997.5
IL_7OSA_1411/25S/1385:1387,
1/25S/1420:1421		Single bulged A
homologous
IL_8P9A_286
IL_14190.2
IL_7OSA_1421/25S/1388:1395,
1/25S/1415:1419		Kink-turn
homologous
IL_8P9A_287
IL_90775.2
IL_7OSA_1431/25S/1398:1400,
1/25S/1411:1412		Single bulged A
homologous
IL_8P9A_288
IL_14190.2
IL_7OSA_1441/25S/1444:1450,
1/25S/2354:2359		7x6 Sarcin-Ricin; G-bulge
homologous
IL_8P9A_289
IL_02666.1
IL_7OSA_2451/25S/1501:1505,
1/25S/1513:1515		C-loop
homologous
IL_8P9A_290
IL_63596.12
IL_7OSA_1461/25S/1532:1536,
1/25S/1585:1590		UAA/GAN
homologous
IL_8C3A_067
NA
IL_7OSA_1471/25S/1618:1621,
1/25S/1824:1826		Other IL
geometric
IL_5TBW_064
NA
IL_7OSA_1481/25S/1623:1625,
1/25S/1818:1822		Isolated non-canonical cWW with bulges
geometric
IL_7ELQ_002
NA
IL_7OSA_2471/25S/1623:1631,
1/25S/1811:1822		No text annotation
IL_7OSA_1491/25S/1627:1631,
1/25S/1811:1816		No text annotation
geometric
IL_5TBW_066
NA
IL_7OSA_1501/25S/1645:1649,
1/25S/1806:1810		Triple sheared
geometric
IL_5TBW_067
NA
IL_7OSA_1511/25S/1661:1663,
1/25S/1786:1788		Isolated non-canonical cWW pair
homologous
IL_8P9A_296
IL_01003.3
IL_7OSA_1521/25S/1669:1670,
1/25S/1778:1780		Single bulged C
homologous
IL_8P9A_297
IL_05642.2
IL_7OSA_1531/25S/1670:1671,
1/25S/1776:1778		Single stack bend
homologous
IL_8P9A_298
IL_15011.2
IL_7OSA_1541/25S/1694:1698,
1/25S/1747:1752		No text annotation
homologous
IL_8P9A_299
IL_25943.1
IL_7OSA_1551/25S/1702:1707,
1/25S/1737:1743		No text annotation
homologous
IL_8P9A_300
IL_00680.1
IL_7OSA_1561/25S/1711:1717,
1/25S/1727:1733		No text annotation
homologous
IL_8P9A_301
IL_93476.1
IL_7OSA_1571/25S/1883:1889,
1/25S/2346:2349		No text annotation
homologous
IL_8C3A_080
NA
IL_7OSA_1581/25S/1895:1897,
1/25S/2338:2340		No text annotation
homologous
IL_8P9A_303
IL_10432.1
IL_7OSA_1591/25S/1898:1901,
1/25S/2336:2337		Major groove platform; stack outside cWW
geometric
IL_5TBW_076
NA
IL_7OSA_2481/25S/1898:1906,
1/25S/2333:2337		No text annotation
homologous
IL_8P9A_305
IL_80252.1
IL_7OSA_1601/25S/1901:1906,
1/25S/2333:2336		Intercalated tWH
geometric
IL_5TBW_077
NA
IL_7OSA_1611/25S/1918:1923,
1/25S/1928:1934		No text annotation
homologous
IL_8C3A_084
NA
IL_7OSA_1621/25S/1940:1942,
1/25S/2106:2108		Isolated non-canonical cWW pair
homologous
IL_8P9A_308
IL_01003.3
IL_7OSA_1631/25S/1947:1948,
1/25S/2098:2101		No text annotation
homologous
IL_8P9A_309
IL_18824.1
IL_7OSA_1641/25S/1950:1953,
1/25S/2094:2096		No text annotation
IL_7OSA_1651/25S/2128:2129,
1/25S/2323:2325		Single bulged A
homologous
IL_8P9A_310
IL_14190.2
IL_7OSA_1661/25S/2156:2161,
1/25S/2173:2180		No text annotation
homologous
IL_8P9A_311
IL_14684.1
IL_7OSA_1671/25S/2196:2199,
1/25S/2245:2246		Minor groove platform, major groove intercalation
homologous
IL_8P9A_312
IL_55206.1
IL_7OSA_1681/25S/2200:2201,
1/25S/2241:2244		Major groove intercalation
homologous
IL_8P9A_313
IL_71421.2
IL_7OSA_1691/25S/2204:2206,
1/25S/2237:2238		No text annotation
IL_7OSA_2491/25S/2204:2210,
1/25S/2235:2238		No text annotation
IL_7OSA_1701/25S/2206:2210,
1/25S/2235:2237		No text annotation
geometric
IL_8C3A_508
NA
IL_7OSA_1711/25S/2211:2217,
1/25S/2228:2234		No text annotation
homologous
IL_8P9A_316
IL_65359.1
IL_7OSA_1721/25S/2276:2277,
1/25S/2307:2310		No text annotation
geometric
IL_8C3A_094
NA
IL_7OSA_1731/25S/2277:2288,
1/25S/2304:2307		No text annotation
homologous
IL_8P9A_318
IL_84014.1
IL_7OSA_1741/25S/2391:2394,
1/25S/2986:2988		No text annotation
homologous
IL_8P9A_319
IL_75527.2
IL_7OSA_1751/25S/2396:2398,
1/25S/2981:2984		No text annotation
homologous
IL_8C3A_097
NA
IL_7OSA_1761/25S/2409:2411,
1/25S/2811:2812		Single bulged U
homologous
IL_8P9A_321
IL_97561.3
IL_7OSA_1771/25S/2412:2413,
1/25S/2807:2810		Minor groove platform
homologous
IL_8C3A_099
NA
IL_7OSA_1781/25S/2423:2425,
1/25S/2604:2607		No text annotation
homologous
IL_8C3A_100
NA
IL_7OSA_1791/25S/2444:2446,
1/25S/2500:2503		Isolated non-canonical cWW pair
geometric
IL_7A0S_078
IL_71625.2
IL_7OSA_2611/25S/2520:2526,
1/25S/2584:2587		No text annotation
homologous
IL_8CRE_106
NA
IL_7OSA_1811/25S/2614:2615,
1/25S/2625:2627		Single bulged A
homologous
IL_8P9A_325
IL_14190.2
IL_7OSA_1821/25S/2666:2668,
1/25S/2686:2690		No text annotation
homologous
IL_8P9A_326
IL_14250.1
IL_7OSA_1831/25S/2718:2721,
1/25S/2735:2738		Tandem non-canonical cWW pairs
homologous
IL_8P9A_327
IL_15225.2
IL_7OSA_1841/25S/2770:2773,
1/25S/2787:2788		Single stack bend
homologous
IL_8C3A_110
NA
IL_7OSA_1851/25S/2823:2824,
1/25S/2865:2867		Major groove platform
geometric
IL_5TBW_102
NA
IL_7OSA_2501/25S/2823:2826,
1/25S/2863:2867		No text annotation
homologous
IL_8C3A_111
NA
IL_7OSA_1861/25S/2824:2826,
1/25S/2863:2865		Isolated non-canonical cWW pair
geometric
IL_5TBW_103
NA
IL_7OSA_1871/25S/2826:2828,
1/25S/2862:2863		Major groove platform
geometric
IL_5TBW_104
NA
IL_7OSA_1881/25S/2828:2830,
1/25S/2858:2862		No text annotation
homologous
IL_8P9A_332
IL_36931.2
IL_7OSA_1891/25S/2835:2839,
1/25S/2849:2853		No text annotation
homologous
IL_8C3A_114
NA
IL_7OSA_1901/25S/2876:2877,
1/25S/2949:2951		No text annotation
homologous
IL_8P9A_334
IL_46637.2
IL_7OSA_1911/25S/2879:2881,
1/25S/2943:2947		Isolated non-canonical cWW with bulges
homologous
IL_8P9A_335
IL_68118.3
IL_7OSA_1921/25S/2881:2882,
1/25S/2940:2943		No text annotation
homologous
IL_8P9A_336
IL_44609.2
IL_7OSA_1931/25S/2889:2891,
1/25S/2912:2914		Isolated non-canonical cWW pair
geometric
IL_5TBW_110
NA
IL_7OSA_1941/25S/2891:2892,
1/25S/2909:2912		Major groove platform with intercalation
homologous
IL_8C3A_119
NA
IL_7OSA_1951/25S/2918:2920,
1/25S/2926:2928		Isolated non-canonical cWW pair
homologous
IL_8P9A_340
IL_01003.3
IL_7OSA_1961/25S/2960:2961,
1/25S/2970:2972		Single bulged A
homologous
IL_8C3A_122
NA
IL_7OSA_1971/25S/3004:3007,
1/25S/3139:3144		Double sheared
homologous
IL_8P9A_342
IL_58355.2
IL_7OSA_1981/25S/3012:3014,
1/25S/3040:3042		Isolated non-canonical cWW pair
homologous
IL_8P9A_343
IL_71625.2
IL_7OSA_1991/25S/3018:3025,
1/25S/3030:3036		8x7 Sarcin-Ricin; G-bulge
homologous
IL_8P9A_344
IL_62167.3
IL_7OSA_2001/25S/3047:3051,
1/25S/3091:3094		No text annotation
homologous
IL_8P9A_345
IL_06671.1
IL_7OSA_2011/25S/3054:3059,
1/25S/3084:3088		No text annotation
homologous
IL_8P9A_346
IL_98200.1
IL_7OSA_2021/25S/3063:3064,
1/25S/3077:3080		No text annotation
homologous
IL_8C3A_128
NA
IL_7OSA_2031/25S/3103:3107,
1/25S/3127:3131		UAA/GAN
homologous
IL_8P9A_348
IL_08938.1
IL_7OSA_2621/25S/3164:3166,
1/25S/3284:3286		Isolated non-canonical cWW pair
homologous
IL_8CRE_130
NA
IL_7OSA_2631/25S/3168:3170,
1/25S/3280:3282		Isolated non-canonical cWW pair
homologous
IL_8P9A_350
IL_71625.2
IL_7OSA_2061/25S/3177:3188,
1/25S/3204:3211		No text annotation
IL_7OSA_2071/25S/3193:3194,
1/25S/3197:3199		Single bulged U
geometric
IL_5TBW_125
NA
IL_7OSA_2081/25S/3225:3229,
1/25S/3258:3260		No text annotation
homologous
IL_8C3A_133
NA
IL_7OSA_2091/25S/3233:3235,
1/25S/3252:3254		Isolated non-canonical cWW pair
homologous
IL_8P9A_354
IL_01003.3
IL_7OSA_2101/25S/3235:3238,
1/25S/3249:3252		Tandem non-canonical cWW pairs
homologous
IL_8P9A_355
IL_71194.2
IL_7OSA_2111/25S/3300:3303,
1/25S/3311:3314		Tandem non-canonical cWW pairs
homologous
IL_8P9A_356
IL_71194.2
IL_7OSA_2121/25S/3318:3320,
1/25S/3387:3388		Single bulged U
homologous
IL_8C3A_136
NA
IL_7OSA_2131/25S/3324:3325,
1/25S/3381:3383		Single bulged U
homologous
IL_8C3A_137
NA
IL_7OSA_2141/25S/3328:3330,
1/25S/3373:3378		No text annotation
homologous
IL_8P9A_359
IL_00086.1
IL_7OSA_2151/25S/3332:3337,
1/25S/3367:3371		No text annotation
homologous
IL_8P9A_360
IL_48489.1
IL_7OSA_2161/25S/3340:3342,
1/25S/3363:3364		Single bulged U
homologous
IL_8C3A_140
NA
IL_7OSA_2171/25S/3342:3345,
1/25S/3360:3363		Double sheared; A in syn
homologous
IL_8P9A_362
IL_58355.2
IL_7OSA_2181/58S/44:64,
1/58S/96:100		No text annotation
homologous
IL_8C3A_150
NA
IL_7OSA_2641/58S/64:66,
1/58S/93:96		Isolated non-canonical cWW pair
homologous
IL_8CRE_150
NA
IL_7OSA_2201/58S/68:69,
1/58S/89:91		Single bulged U
homologous
IL_8P9A_372
IL_97561.3
IL_7OSA_2211/58S/69:73,
1/58S/78:89		No text annotation
IL_7OSA_2221/AB/15:16,
1/AB/63:65		Single bulged A
homologous
IL_8P9A_364
IL_14190.2
IL_7OSA_2231/AB/21:27,
1/AB/53:58		No text annotation
homologous
IL_8P9A_365
IL_41504.1
IL_7OSA_2241/AB/28:29,
1/AB/49:52		No text annotation
homologous
IL_8C3A_145
NA
IL_7OSA_2251/AB/29:30,
1/AB/47:49		Single stack bend
homologous
IL_8C3A_146
NA
IL_7OSA_2261/AB/32:36,
1/AB/41:45		No text annotation
homologous
IL_8C3A_147
NA
IL_7OSA_2271/AB/72:80,
1/AB/100:106		8x7 Sarcin-Ricin; G-bulge
homologous
IL_8P9A_369
IL_62167.3
IL_7OSA_2281/AB/84:87,
1/AB/94:96		Isolated non-canonical cWW pair
homologous
IL_8C3A_149
NA

Problematic loops

#loop idProblemSequence
IL_7OSA_011No text annotation
IL_7OSA_013No text annotation
IL_7OSA_014No text annotation
IL_7OSA_016No text annotation
IL_7OSA_017Isolated non-canonical cWW pair
IL_7OSA_024C-loop with extra cWW pair
IL_7OSA_033No text annotation
IL_7OSA_034No text annotation
IL_7OSA_038No text annotation
IL_7OSA_236Isolated cWS basepair
IL_7OSA_061No text annotation
IL_7OSA_066No text annotation
IL_7OSA_239No text annotation
IL_7OSA_068No text annotation
IL_7OSA_240No text annotation
IL_7OSA_241No text annotation
IL_7OSA_093Other IL
IL_7OSA_242No text annotation
IL_7OSA_095No text annotation
IL_7OSA_101No text annotation
IL_7OSA_107Triple sheared related
IL_7OSA_244Tandem non-canonical cWW pairs
IL_7OSA_130No text annotation
IL_7OSA_145No text annotation
IL_7OSA_246No text annotation
IL_7OSA_180No text annotation
IL_7OSA_251No text annotation
IL_7OSA_204Partly complementary
IL_7OSA_205Tandem non-canonical cWW pairs
IL_7OSA_219Tandem non-canonical cWW pairs
IL_7OSA_229No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7OSA_0011/18S/41:42,
1/18S/433:439,
1/18S/464:466		No text annotation
geometric
J3_4V88_078
NA
J3_7OSA_0291/18S/41:48,
1/18S/431:439,
1/18S/464:466		No text annotation
homologous
J3_8P9A_069
J3_63856.1
J3_7OSA_0021/18S/760:763,
1/18S/773:775,
1/18S/785:790		No text annotation
homologous
J3_8P9A_073
J3_97642.2
J3_7OSA_0031/18S/881:884,
1/18S/928:936,
1/18S/943:947		No text annotation
homologous
J3_8P9A_074
J3_23895.1
J3_7OSA_0041/18S/1037:1039,
1/18S/1079:1083,
1/18S/1090:1094		No text annotation
homologous
J3_8C3A_037
NA
J3_7OSA_0051/18S/1161:1164,
1/18S/1581:1587,
1/18S/1609:1616		No text annotation
homologous
J3_8C3A_038
NA
J3_7OSA_0061/18S/1168:1171,
1/18S/1468:1470,
1/18S/1574:1577		No text annotation
geometric
J3_4V88_036
NA
J3_7OSA_0071/18S/1180:1187,
1/18S/1198:1209,
1/18S/1454:1458		No text annotation
homologous
J3_8C3A_040
NA
J3_7OSA_0081/18S/1215:1220,
1/18S/1263:1267,
1/18S/1442:1448		No text annotation
homologous
J3_8C3A_041
NA
J3_7OSA_0091/18S/1283:1288,
1/18S/1327:1332,
1/18S/1419:1424		No text annotation
homologous
J3_8P9A_080
J3_17077.1
J3_7OSA_0101/18S/1293:1294,
1/18S/1303:1306,
1/18S/1318:1322		No text annotation
homologous
J3_8P9A_081
J3_76043.4
J3_7OSA_0111/18S/1336:1338,
1/18S/1386:1389,
1/18S/1412:1415		No text annotation
geometric
J3_4V88_040
NA
J3_7OSA_0441/18S/1336:1338,
1/18S/1386:1391,
1/18S/1407:1415		No text annotation
homologous
J3_8CRE_085
J3_88233.1
J3_7OSA_0121/18S/1470:1474,
1/18S/1533:1540,
1/18S/1571:1574		No text annotation
homologous
J3_8C3A_044
NA
J3_7OSA_0131/25S/113:123,
1/25S/149:158,
1/25S/263:267		No text annotation
homologous
J3_8P9A_042
J3_69230.1
J3_7OSA_0321/25S/113:124,
1/25S/144:158,
1/25S/263:267		No text annotation
J3_7OSA_0331/25S/185:189,
1/25S/205:214,
1/25S/226:231		No text annotation
homologous
J3_8P9A_044
J3_97456.1
J3_7OSA_0341/25S/340:356,
1/25S/363:368,
1/58S/21:24		No text annotation
homologous
J3_8P9A_045
J3_07616.1
J3_7OSA_0141/25S/369:376,
1/25S/403:404,
1/58S/19:20		No text annotation
geometric
J3_5TBW_002
NA
J3_7OSA_0351/25S/369:379,
1/25S/390:404,
1/58S/19:20		No text annotation
homologous
J3_8P9A_047
J3_17917.1
J3_7OSA_0151/25S/502:503,
1/25S/588:597,
1/25S/606:611		No text annotation
homologous
J3_8P9A_048
J3_86133.1
J3_7OSA_0161/25S/814:820,
1/25S/905:907,
1/25S/923:926		No text annotation
homologous
J3_8C3A_003
NA
J3_7OSA_0171/25S/829:831,
1/25S/863:867,
1/25S/892:895		No text annotation
homologous
J3_8C3A_004
NA
J3_7OSA_0181/25S/986:987,
1/25S/1062:1066,
1/25S/1092:1098		No text annotation
geometric
J3_5TBW_006
NA
J3_7OSA_0451/25S/1230:1232,
1/25S/1256:1262,
1/25S/1277:1279		No text annotation
homologous
J3_8P9A_052
J3_37832.1
J3_7OSA_0201/25S/1479:1485,
1/25S/1857:1859,
1/25S/1871:1874		No text annotation
homologous
J3_8P9A_053
J3_05025.1
J3_7OSA_0211/25S/1488:1491,
1/25S/1837:1843,
1/25S/1852:1854		No text annotation
homologous
J3_8P9A_054
J3_76012.1
J3_7OSA_0221/25S/1526:1531,
1/25S/1591:1595,
1/25S/1612:1613		No text annotation
homologous
J3_8P9A_055
J3_94309.1
J3_7OSA_0461/25S/1537:1542,
1/25S/1551:1562,
1/25S/1577:1584		No text annotation
J3_7OSA_0231/25S/1631:1632,
1/25S/1641:1645,
1/25S/1810:1811		No text annotation
geometric
J3_8C3A_054
NA
J3_7OSA_0381/25S/1631:1632,
1/25S/1641:1649,
1/25S/1806:1811		No text annotation
J3_7OSA_0391/25S/1654:1658,
1/25S/1791:1792,
1/25S/1796:1801		No text annotation
homologous
J3_8P9A_058
J3_08594.1
J3_7OSA_0241/25S/2432:2435,
1/25S/2512:2517,
1/25S/2590:2597		No text annotation
homologous
J3_8C3A_008
NA
J3_7OSA_0401/25S/2529:2532,
1/25S/2547:2563,
1/25S/2578:2581		No text annotation
homologous
J3_8P9A_060
J3_76247.1
J3_7OSA_0411/25S/2651:2653,
1/25S/2754:2765,
1/25S/2793:2798		No text annotation
homologous
J3_8P9A_061
J3_04772.1
J3_7OSA_0251/25S/2664:2666,
1/25S/2690:2692,
1/25S/2701:2706		No text annotation
homologous
J3_8P9A_062
J3_05327.1
J3_7OSA_0261/25S/2886:2889,
1/25S/2914:2916,
1/25S/2930:2936		No text annotation
homologous
J3_8P9A_063
J3_44047.1
J3_7OSA_0421/25S/3171:3176,
1/25S/3212:3220,
1/25S/3265:3279		No text annotation
homologous
J3_8P9A_064
J3_03190.1
J3_7OSA_0271/25S/3298:3300,
1/25S/3314:3318,
1/25S/3388:3390		No text annotation
homologous
J3_8P9A_065
J3_81015.1
J3_7OSA_0431/58S/44:45,
1/58S/58:64,
1/58S/96:100		No text annotation
homologous
J3_8P9A_067
J3_01004.1
J3_7OSA_0281/AB/9:14,
1/AB/66:67,
1/AB/111:112		No text annotation
homologous
J3_8C3A_059
NA
J4_7OSA_0011/18S/99:107,
1/18S/307:309,
1/18S/357:361,
1/18S/383:384		No text annotation
homologous
J4_8C3A_021
NA
J4_7OSA_0021/18S/622:624,
1/18S/975:980,
1/18S/1021:1032,
1/18S/1103:1104		No text annotation
homologous
J4_8P9A_022
J4_14595.1
J4_7OSA_0031/25S/112:113,
1/25S/267:272,
1/25S/293:299,
1/25S/316:319		No text annotation
homologous
J4_8P9A_012
J4_94698.1
J4_7OSA_0041/25S/1451:1457,
1/25S/1475:1476,
1/25S/1877:1880,
1/25S/2352:2353		No text annotation
homologous
J4_8P9A_014
J4_34212.1
J4_7OSA_0051/25S/1492:1496,
1/25S/1520:1525,
1/25S/1614:1615,
1/25S/1829:1836		No text annotation
homologous
J4_8P9A_015
J4_47264.1
J4_7OSA_0061/25S/1674:1675,
1/25S/1693:1694,
1/25S/1752:1753,
1/25S/1772:1773		No text annotation
homologous
J4_8C3A_005
NA
J4_7OSA_0071/25S/2130:2134,
1/25S/2146:2150,
1/25S/2186:2190,
1/25S/2317:2322		No text annotation
homologous
J4_8P9A_017
J4_78485.1
J4_7OSA_0081/25S/2192:2194,
1/25S/2248:2249,
1/25S/2267:2276,
1/25S/2310:2315		No text annotation
homologous
J4_8P9A_018
J4_42306.1
J4_7OSA_0091/25S/2654:2658,
1/25S/2712:2716,
1/25S/2740:2742,
1/25S/2751:2753		No text annotation
homologous
J4_8P9A_019
J4_59590.1
J4_7OSA_0101/25S/3010:3012,
1/25S/3042:3043,
1/25S/3098:3100,
1/25S/3134:3136		No text annotation
homologous
J4_8P9A_020
J4_37757.1
J4_7OSA_0111/PSIT/7:10,
1/PSIT/26:28,
1/PSIT/44:50,
1/PSIT/66:67		tRNA junction
homologous
J4_7MRL_001
J4_95067.1
J5_7OSA_0011/18S/31:35,
1/18S/473:479,
1/18S/509:516,
1/18S/536:546,
1/18S/592:595		No text annotation
J5_7OSA_0021/18S/54:57,
1/18S/90:97,
1/18S/386:388,
1/18S/409:411,
1/18S/422:426		No text annotation
homologous
J5_8C3A_020
NA
J5_7OSA_0031/25S/20:22,
1/58S/35:42,
1/58S/102:107,
1/58S/115:116,
1/58S/137:139		No text annotation
homologous
J5_8P9A_010
J5_27223.1
J5_7OSA_0041/25S/658:663,
1/25S/799:802,
1/25S/941:944,
1/25S/1375:1376,
1/25S/1431:1437		No text annotation
homologous
J5_8P9A_011
J5_08384.1
J5_7OSA_0051/25S/675:678,
1/25S/702:706,
1/25S/713:721,
1/25S/749:751,
1/25S/782:787		No text annotation
homologous
J5_8P9A_012
J5_56629.1
J5_7OSA_0061/25S/1906:1914,
1/25S/1938:1939,
1/25S/2109:2110,
1/25S/2114:2122,
1/25S/2331:2333		No text annotation
homologous
J5_8P9A_013
J5_99177.1
J5_7OSA_0071/25S/2399:2406,
1/25S/2815:2823,
1/25S/2867:2876,
1/25S/2951:2957,
1/25S/2975:2980		No text annotation
J5_7OSA_0081/25S/2416:2419,
1/25S/2611:2614,
1/25S/2627:2628,
1/25S/2650:2651,
1/25S/2798:2804		No text annotation
homologous
J5_8P9A_015
J5_96125.1
J6_7OSA_0051/18S/633:641,
1/18S/693:699,
1/18S/739:744,
1/18S/807:817,
1/18S/854:865,
1/18S/965:966		No text annotation
J6_7OSA_0061/18S/633:641,
1/18S/693:699,
1/18S/739:744,
1/18S/807:817,
1/18S/854:866,
1/18S/962:966		No text annotation
J6_7OSA_0031/25S/22:27,
1/25S/58:68,
1/25S/75:79,
1/25S/106:110,
1/25S/321:331,
1/58S/32:35		No text annotation
J6_7OSA_0041/25S/2416:2419,
1/25S/2611:2614,
1/25S/2627:2628,
1/25S/2650:2653,
1/25S/2754:2765,
1/25S/2793:2804		No text annotation
J7_7OSA_0011/25S/949:954,
1/25S/967:968,
1/25S/1114:1117,
1/25S/1141:1146,
1/25S/1157:1161,
1/25S/1338:1339,
1/25S/1365:1370		No text annotation

Problematic loops

#loop idProblemSequence
J3_7OSA_030No text annotation
J3_7OSA_031No text annotation
J3_7OSA_036No text annotation
J3_7OSA_019No text annotation
J3_7OSA_037No text annotation
J6_7OSA_001No text annotation
J6_7OSA_002No text annotation

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