7OSA Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_7OSA_001 | 1/18S/7:17 | No text annotation | homologous HL_8C3A_192 NA | |
HL_7OSA_003 | 1/18S/154:160 | GNRA related | homologous HL_8C3A_194 NA | |
HL_7OSA_005 | 1/18S/243:250 | T-loop with 1 bulged base | homologous HL_8C3A_197 NA | |
HL_7OSA_006 | 1/18S/276:279 | Mini UNCG | homologous HL_8P9A_196 HL_48778.2 | |
HL_7OSA_007 | 1/18S/330:338 | GNRA related | homologous HL_8C3A_199 NA | |
HL_7OSA_008 | 1/18S/368:373 | No text annotation | homologous HL_8P9A_198 HL_93535.1 | |
HL_7OSA_009 | 1/18S/393:404 | No text annotation | homologous HL_8P9A_199 HL_06226.4 | |
HL_7OSA_010 | 1/18S/414:419 | UNCG | homologous HL_8P9A_200 HL_34617.5 | |
HL_7OSA_011 | 1/18S/450:456 | No text annotation | homologous HL_8P9A_201 HL_48417.5 | |
HL_7OSA_126 | 1/18S/491:496 | No text annotation | ||
HL_7OSA_013 | 1/18S/520:532 | No text annotation | homologous HL_8P9A_203 HL_05304.3 | |
HL_7OSA_014 | 1/18S/569:574 | GNRA variation | homologous HL_8C3A_206 NA | |
HL_7OSA_017 | 1/18S/764:772 | No text annotation | homologous HL_8C3A_208 NA | |
HL_7OSA_127 | 1/18S/777:783 | No text annotation | ||
HL_7OSA_128 | 1/18S/900:909 | No text annotation | homologous HL_8P9A_209 HL_75293.5 | |
HL_7OSA_021 | 1/18S/937:942 | GNRA | homologous HL_8C3A_212 NA | |
HL_7OSA_022 | 1/18S/997:1007 | No text annotation | homologous HL_8C3A_213 NA | |
HL_7OSA_023 | 1/18S/1055:1064 | No text annotation | ||
HL_7OSA_024 | 1/18S/1084:1089 | GNRA | homologous HL_8C3A_215 NA | |
HL_7OSA_025 | 1/18S/1121:1126 | GNRA | homologous HL_8P9A_214 HL_37824.7 | |
HL_7OSA_026 | 1/18S/1188:1197 | No text annotation | homologous HL_8C3A_217 NA | |
HL_7OSA_027 | 1/18S/1238:1247 | Anticodon loop related | geometric HL_4V88_213 NA | |
HL_7OSA_028 | 1/18S/1296:1301 | GNRA | homologous HL_8C3A_219 NA | |
HL_7OSA_029 | 1/18S/1309:1316 | T-loop related | homologous HL_8C3A_220 NA | |
HL_7OSA_030 | 1/18S/1359:1364 | No text annotation | homologous HL_8C3A_221 NA | |
HL_7OSA_031 | 1/18S/1396:1402 | GNRA | geometric HL_6YMC_001 HL_37824.7 | |
HL_7OSA_032 | 1/18S/1501:1506 | GNRA | homologous HL_8C3A_223 NA | |
HL_7OSA_033 | 1/18S/1550:1561 | No text annotation | homologous HL_8C3A_224 NA | |
HL_7OSA_034 | 1/18S/1594:1602 | No text annotation | homologous HL_8P9A_223 NA | |
HL_7OSA_118 | 1/18S/1686:1715 | No text annotation | ||
HL_7OSA_035 | 1/18S/1690:1711 | No text annotation | homologous HL_8P9A_224 HL_89346.1 | |
HL_7OSA_036 | 1/18S/1778:1783 | GNRA variation | homologous HL_8C3A_227 NA | |
HL_7OSA_037 | 1/25S/38:45 | No text annotation | homologous HL_8P9A_113 HL_30068.2 | |
HL_7OSA_038 | 1/25S/69:74 | No text annotation | homologous HL_8P9A_114 HL_53890.2 | |
HL_7OSA_039 | 1/25S/90:96 | No text annotation | homologous HL_8P9A_115 HL_37369.2 | |
HL_7OSA_040 | 1/25S/132:136 | No text annotation | geometric HL_5TBW_004 NA | |
HL_7OSA_041 | 1/25S/194:201 | No text annotation | homologous HL_8P9A_117 HL_01609.3 | |
HL_7OSA_042 | 1/25S/208:212 | No text annotation | geometric HL_8C3A_006 NA | |
HL_7OSA_129 | 1/25S/216:224 | No text annotation | homologous HL_8P9A_119 HL_27670.2 | |
HL_7OSA_044 | 1/25S/278:287 | T-loop related | homologous HL_8P9A_120 HL_77436.5 | |
HL_7OSA_045 | 1/25S/303:312 | No text annotation | homologous HL_8P9A_121 HL_77600.2 | |
HL_7OSA_046 | 1/25S/357:362 | GNRA | homologous HL_8P9A_122 HL_37824.7 | |
HL_7OSA_047 | 1/25S/382:387 | GNRA | homologous HL_8C3A_011 NA | |
HL_7OSA_130 | 1/25S/542:549 | No text annotation | ||
HL_7OSA_049 | 1/25S/599:604 | GNRA | homologous HL_8P9A_125 HL_37824.7 | |
HL_7OSA_050 | 1/25S/640:649 | T-loop with 2 stacked bulged bases | homologous HL_8P9A_126 HL_28252.8 | |
HL_7OSA_051 | 1/25S/686:694 | No text annotation | homologous HL_8C3A_015 NA | |
HL_7OSA_052 | 1/25S/707:712 | GNRA | homologous HL_8C3A_016 NA | |
HL_7OSA_053 | 1/25S/732:737 | GNRA | homologous HL_8P9A_129 HL_37824.7 | |
HL_7OSA_054 | 1/25S/763:768 | No text annotation | homologous HL_8C3A_018 NA | |
HL_7OSA_055 | 1/25S/844:849 | GNRA | homologous HL_8P9A_131 HL_37824.7 | |
HL_7OSA_056 | 1/25S/876:885 | No text annotation | homologous HL_8P9A_132 HL_88205.2 | |
HL_7OSA_057 | 1/25S/910:918 | No text annotation | homologous HL_8P9A_133 HL_87553.1 | |
HL_7OSA_058 | 1/25S/958:963 | No text annotation | homologous HL_8P9A_134 HL_70782.2 | |
HL_7OSA_131 | 1/25S/1013:1037 | No text annotation | ||
HL_7OSA_060 | 1/25S/1074:1084 | No text annotation | ||
HL_7OSA_061 | 1/25S/1126:1132 | GNRA | homologous HL_8P9A_137 HL_37824.7 | |
HL_7OSA_062 | 1/25S/1148:1155 | No text annotation | homologous HL_8P9A_138 HL_42998.2 | |
HL_7OSA_063 | 1/25S/1238:1250 | No text annotation | geometric HL_4TUE_219 HL_75293.5 | |
HL_7OSA_064 | 1/25S/1267:1274 | No text annotation | homologous HL_8P9A_140 HL_81538.2 | |
HL_7OSA_065 | 1/25S/1347:1357 | No text annotation | homologous HL_8P9A_141 HL_29762.1 | |
HL_7OSA_066 | 1/25S/1403:1408 | GNRA | homologous HL_8P9A_142 HL_37824.7 | |
HL_7OSA_067 | 1/25S/1462:1470 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
HL_7OSA_068 | 1/25S/1506:1512 | No text annotation | homologous HL_8P9A_144 HL_57176.2 | |
HL_7OSA_069 | 1/25S/1544:1549 | GNRA variation | homologous HL_8C3A_033 NA | |
HL_7OSA_071 | 1/25S/1599:1608 | No text annotation | homologous HL_8C3A_035 NA | |
HL_7OSA_072 | 1/25S/1634:1639 | GNRA | homologous HL_8P9A_147 HL_37824.7 | |
HL_7OSA_073 | 1/25S/1680:1688 | No text annotation | homologous HL_8C3A_037 NA | |
HL_7OSA_074 | 1/25S/1719:1725 | No text annotation | homologous HL_8P9A_149 HL_25967.2 | |
HL_7OSA_075 | 1/25S/1757:1768 | No text annotation | ||
HL_7OSA_076 | 1/25S/1792:1796 | Mini UNCG | homologous HL_8P9A_151 HL_48778.2 | |
HL_7OSA_077 | 1/25S/1844:1851 | No text annotation | homologous HL_8P9A_152 HL_89567.2 | |
HL_7OSA_078 | 1/25S/1862:1868 | GNRA | homologous HL_8P9A_153 HL_37824.7 | |
HL_7OSA_079 | 1/25S/1923:1928 | UNCG | homologous HL_8P9A_154 HL_34617.5 | |
HL_7OSA_081 | 1/25S/2110:2114 | No text annotation | homologous HL_8P9A_156 HL_55195.3 | |
HL_7OSA_082 | 1/25S/2135:2145 | No text annotation | homologous HL_8C3A_046 NA | |
HL_7OSA_083 | 1/25S/2164:2170 | GNRA | homologous HL_8C3A_047 NA | |
HL_7OSA_084 | 1/25S/2220:2225 | GNRA | homologous HL_8P9A_159 HL_37824.7 | |
HL_7OSA_085 | 1/25S/2253:2263 | No text annotation | homologous HL_8C3A_049 NA | |
HL_7OSA_086 | 1/25S/2292:2300 | No text annotation | homologous HL_8C3A_050 NA | |
HL_7OSA_087 | 1/25S/2369:2378 | No text annotation | homologous HL_8C3A_051 NA | |
HL_7OSA_089 | 1/25S/2536:2543 | No text annotation | ||
HL_7OSA_090 | 1/25S/2568:2573 | No text annotation | geometric HL_8C3A_006 NA | |
HL_7OSA_091 | 1/25S/2616:2624 | No text annotation | homologous HL_8P9A_165 HL_85367.2 | |
HL_7OSA_092 | 1/25S/2633:2645 | No text annotation | homologous HL_8P9A_166 HL_91939.2 | |
HL_7OSA_093 | 1/25S/2673:2681 | No text annotation | homologous HL_8C3A_057 NA | |
HL_7OSA_094 | 1/25S/2693:2700 | Pseudoknot geometry | homologous HL_8P9A_168 HL_93324.4 | |
HL_7OSA_095 | 1/25S/2724:2732 | No text annotation | homologous HL_8P9A_169 HL_80599.2 | |
HL_7OSA_096 | 1/25S/2744:2749 | GNRA | homologous HL_8P9A_170 HL_37824.7 | |
HL_7OSA_097 | 1/25S/2776:2784 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
HL_7OSA_098 | 1/25S/2840:2848 | No text annotation | homologous HL_8P9A_172 HL_32735.2 | |
HL_7OSA_099 | 1/25S/2897:2904 | No text annotation | homologous HL_8P9A_173 HL_31585.4 | |
HL_7OSA_100 | 1/25S/2920:2926 | No text annotation | homologous HL_8P9A_174 HL_30068.2 | |
HL_7OSA_101 | 1/25S/2963:2968 | GNRA | homologous HL_8P9A_175 HL_37824.7 | |
HL_7OSA_102 | 1/25S/3025:3030 | GNRA | homologous HL_8P9A_176 HL_37824.7 | |
HL_7OSA_103 | 1/25S/3068:3073 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
HL_7OSA_104 | 1/25S/3110:3124 | No text annotation | homologous HL_8C3A_068 NA | |
HL_7OSA_105 | 1/25S/3194:3197 | No text annotation | geometric HL_6U8D_003 HL_32346.4 | |
HL_7OSA_106 | 1/25S/3240:3247 | No text annotation | homologous HL_8P9A_180 HL_07886.3 | |
HL_7OSA_107 | 1/25S/3303:3311 | No text annotation | homologous HL_8P9A_181 HL_64690.6 | |
HL_7OSA_108 | 1/25S/3349:3356 | No text annotation | ||
HL_7OSA_122 | 1/58S/47:56 | Pseudoknot with intercalation | geometric HL_5TBW_230 NA | |
HL_7OSA_123 | 1/58S/68:91 | No text annotation | homologous HL_8C3A_075 NA | |
HL_7OSA_109 | 1/58S/73:78 | No text annotation | ||
HL_7OSA_110 | 1/58S/108:114 | No text annotation | homologous HL_8C3A_076 NA | |
HL_7OSA_111 | 1/58S/124:129 | No text annotation | homologous HL_8P9A_189 HL_86883.1 | |
HL_7OSA_124 | 1/AB/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
HL_7OSA_112 | 1/AB/36:41 | No text annotation | geometric HL_5TBW_185 NA | |
HL_7OSA_113 | 1/AB/88:93 | GNRA | homologous HL_8C3A_074 NA | |
HL_7OSA_125 | 1/PSIT/13:23 | No text annotation | homologous HL_3WQY_001 HL_07951.3 | |
HL_7OSA_115 | 1/PSIT/32:40 | No text annotation | homologous HL_9DFC_104 HL_06059.6 | |
HL_7OSA_132 | 1/PSIT/54:62 | T-loop with 2 stacked bulged bases | homologous HL_8WND_005 HL_28252.8 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_7OSA_002 | No text annotation | ||
HL_7OSA_004 | No text annotation | ||
HL_7OSA_012 | No text annotation | ||
HL_7OSA_015 | No text annotation | ||
HL_7OSA_016 | No text annotation | ||
HL_7OSA_018 | No text annotation | ||
HL_7OSA_019 | No text annotation | ||
HL_7OSA_020 | No text annotation | ||
HL_7OSA_117 | No text annotation | ||
HL_7OSA_119 | No text annotation | ||
HL_7OSA_043 | No text annotation | ||
HL_7OSA_048 | No text annotation | ||
HL_7OSA_120 | No text annotation | ||
HL_7OSA_059 | No text annotation | ||
HL_7OSA_070 | No text annotation | ||
HL_7OSA_080 | No text annotation | ||
HL_7OSA_088 | No text annotation | ||
HL_7OSA_121 | tRNA D-loop | ||
HL_7OSA_114 | No text annotation | ||
HL_7OSA_116 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_7OSA_001 | 1/18S/24:26, 1/18S/600:601 | Single bulged C | homologous IL_8P9A_373 IL_61258.15 | |
IL_7OSA_002 | 1/18S/35:37, 1/18S/471:473 | Isolated non-canonical cWW pair | homologous IL_8C3A_393 NA | |
IL_7OSA_003 | 1/18S/37:41, 1/18S/466:471 | Triple sheared related | homologous IL_8C3A_394 NA | |
IL_7OSA_004 | 1/18S/42:48, 1/18S/431:433 | No text annotation | geometric IL_4V88_387 NA | |
IL_7OSA_005 | 1/18S/50:52, 1/18S/428:429 | Minor groove platform | homologous IL_8P9A_377 IL_51454.3 | |
IL_7OSA_006 | 1/18S/58:63, 1/18S/87:89 | No text annotation | homologous IL_8P9A_378 IL_61299.4 | |
IL_7OSA_007 | 1/18S/64:69, 1/18S/82:86 | No text annotation | homologous IL_8C3A_398 NA | |
IL_7OSA_008 | 1/18S/109:112, 1/18S/302:305 | Tandem non-canonical cWW pairs | homologous IL_8C3A_399 NA | |
IL_7OSA_009 | 1/18S/113:116, 1/18S/300:301 | Multiple bulged bases | homologous IL_8P9A_381 IL_82107.4 | |
IL_7OSA_010 | 1/18S/117:122, 1/18S/295:299 | No text annotation | homologous IL_8P9A_382 IL_29223.1 | |
IL_7OSA_230 | 1/18S/142:149, 1/18S/165:172 | No text annotation | homologous IL_8P9A_383 IL_80604.6 | |
IL_7OSA_012 | 1/18S/150:152, 1/18S/162:164 | No text annotation | homologous IL_8P9A_384 IL_44465.1 | |
IL_7OSA_252 | 1/18S/204:206, 1/18S/259:263 | No text annotation | homologous IL_8P9A_386 IL_51387.2 | |
IL_7OSA_253 | 1/18S/206:208, 1/18S/257:259 | Isolated non-canonical cWW pair | homologous IL_8CRE_404 IL_28037.2 | |
IL_7OSA_015 | 1/18S/265:267, 1/18S/288:289 | Single bulged A | homologous IL_8P9A_388 IL_31462.6 | |
IL_7OSA_231 | 1/18S/270:273, 1/18S/283:285 | No text annotation | homologous IL_8P9A_389 IL_15698.3 | |
IL_7OSA_232 | 1/18S/275:276, 1/18S/279:281 | Single bulged U | homologous IL_8C3A_409 NA | |
IL_7OSA_018 | 1/18S/311:316, 1/18S/348:355 | Kink-turn with non-sequential stacking | homologous IL_8C3A_410 NA | |
IL_7OSA_019 | 1/18S/318:323, 1/18S/345:346 | No text annotation | homologous IL_8P9A_392 IL_47074.2 | |
IL_7OSA_020 | 1/18S/363:365, 1/18S/376:381 | No text annotation | homologous IL_8C3A_412 NA | |
IL_7OSA_021 | 1/18S/389:391, 1/18S/406:408 | Isolated cWH basepair | homologous IL_8P9A_394 IL_10167.6 | |
IL_7OSA_022 | 1/18S/411:413, 1/18S/420:422 | Isolated non-canonical cWW pair | homologous IL_8C3A_414 NA | |
IL_7OSA_023 | 1/18S/439:441, 1/18S/463:464 | Single bulged U | homologous IL_8P9A_396 IL_89505.4 | |
IL_7OSA_254 | 1/18S/443:447, 1/18S/460:461 | No text annotation | homologous IL_8P9A_397 IL_03109.3 | |
IL_7OSA_255 | 1/18S/447:448, 1/18S/458:460 | Single bulged G | homologous IL_8P9A_398 IL_00225.13 | |
IL_7OSA_025 | 1/18S/481:482, 1/18S/505:507 | No text annotation | ||
IL_7OSA_026 | 1/18S/517:520, 1/18S/532:535 | Double sheared | geometric IL_6YL5_010 IL_09705.15 | |
IL_7OSA_027 | 1/18S/550:557, 1/18S/587:588 | SSU/LSU pseudoknot | homologous IL_8P9A_402 IL_41203.4 | |
IL_7OSA_028 | 1/18S/557:559, 1/18S/586:587 | Single bulged U | homologous IL_8C3A_424 NA | |
IL_7OSA_029 | 1/18S/562:568, 1/18S/575:583 | No text annotation | homologous IL_8P9A_404 IL_54177.4 | |
IL_7OSA_030 | 1/18S/616:622, 1/18S/1104:1105 | No text annotation | homologous IL_8C3A_426 NA | |
IL_7OSA_031 | 1/18S/624:626, 1/18S/973:975 | Isolated non-canonical cWW pair | homologous IL_8P9A_406 IL_87907.2 | |
IL_7OSA_032 | 1/18S/627:631, 1/18S/968:972 | No text annotation | homologous IL_8P9A_407 IL_17136.7 | |
IL_7OSA_233 | 1/18S/644:646, 1/18S/689:690 | Single stack bend with bulge | geometric IL_5TBW_101 NA | |
IL_7OSA_256 | 1/18S/646:649, 1/18S/685:689 | No text annotation | geometric IL_4DB2_001 IL_68909.1 | |
IL_7OSA_035 | 1/18S/746:747, 1/18S/802:805 | Major groove minor groove platform; mini C-loop | homologous IL_8C3A_430 NA | |
IL_7OSA_036 | 1/18S/748:750, 1/18S/799:801 | Isolated non-canonical cWW pair | homologous IL_8C3A_431 NA | |
IL_7OSA_037 | 1/18S/751:759, 1/18S/791:798 | No text annotation | homologous IL_8C3A_503 NA | |
IL_7OSA_234 | 1/18S/817:824, 1/18S/848:854 | No text annotation | ||
IL_7OSA_039 | 1/18S/865:866, 1/18S/962:965 | Major groove platform; stack outside cWW | homologous IL_8P9A_417 IL_50694.7 | |
IL_7OSA_040 | 1/18S/868:870, 1/18S/957:960 | Isolated non-canonical cWW pair | homologous IL_8P9A_418 IL_57744.1 | |
IL_7OSA_041 | 1/18S/871:874, 1/18S/953:956 | No text annotation | homologous IL_8P9A_419 IL_85033.2 | |
IL_7OSA_042 | 1/18S/874:878, 1/18S/950:953 | No text annotation | homologous IL_8P9A_420 IL_85033.2 | |
IL_7OSA_043 | 1/18S/885:888, 1/18S/924:927 | No text annotation | homologous IL_8P9A_421 IL_85033.2 | |
IL_7OSA_044 | 1/18S/893:895, 1/18S/917:919 | Isolated non-canonical cWW pair | geometric IL_4V88_433 NA | |
IL_7OSA_235 | 1/18S/893:899, 1/18S/910:919 | No text annotation | homologous IL_8P9A_422 IL_57741.1 | |
IL_7OSA_045 | 1/18S/895:899, 1/18S/910:917 | Kink-turn | geometric IL_4V88_434 NA | |
IL_7OSA_046 | 1/18S/985:990, 1/18S/1014:1016 | No text annotation | homologous IL_8P9A_423 IL_97273.1 | |
IL_7OSA_047 | 1/18S/990:994, 1/18S/1010:1014 | No text annotation | homologous IL_8P9A_424 IL_17136.7 | |
IL_7OSA_048 | 1/18S/1034:1036, 1/18S/1095:1101 | No text annotation | homologous IL_8P9A_425 IL_82706.1 | |
IL_7OSA_049 | 1/18S/1041:1044, 1/18S/1074:1077 | Tandem non-canonical cWW pairs | homologous IL_8C3A_444 NA | |
IL_7OSA_050 | 1/18S/1051:1053, 1/18S/1066:1067 | Single bulged U | geometric IL_3TZR_002 IL_89505.4 | |
IL_7OSA_051 | 1/18S/1111:1118, 1/18S/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_8C3A_446 NA | |
IL_7OSA_052 | 1/18S/1146:1147, 1/18S/1630:1632 | Single bulged A | homologous IL_8C3A_447 NA | |
IL_7OSA_053 | 1/18S/1149:1151, 1/18S/1627:1628 | Single bulged G | homologous IL_8C3A_448 NA | |
IL_7OSA_054 | 1/18S/1157:1160, 1/18S/1617:1621 | C-loop | homologous IL_8C3A_449 NA | |
IL_7OSA_055 | 1/18S/1173:1175, 1/18S/1464:1466 | Isolated non-canonical cWW pair | homologous IL_8P9A_432 IL_87907.2 | |
IL_7OSA_056 | 1/18S/1178:1179, 1/18S/1459:1461 | Minor groove platform | homologous IL_8P9A_433 IL_51454.3 | |
IL_7OSA_057 | 1/18S/1213:1215, 1/18S/1448:1450 | Isolated non-canonical cWW pair | homologous IL_8C3A_452 NA | |
IL_7OSA_058 | 1/18S/1223:1233, 1/18S/1252:1260 | No text annotation | ||
IL_7OSA_059 | 1/18S/1233:1236, 1/18S/1249:1252 | No text annotation | ||
IL_7OSA_060 | 1/18S/1268:1270, 1/18S/1440:1441 | Single bulged U | homologous IL_8C3A_455 NA | |
IL_7OSA_237 | 1/18S/1272:1276, 1/18S/1436:1438 | No text annotation | homologous IL_8P9A_438 IL_76319.5 | |
IL_7OSA_238 | 1/18S/1276:1278, 1/18S/1430:1436 | No text annotation | homologous IL_8P9A_440 IL_49061.1 | |
IL_7OSA_062 | 1/18S/1280:1281, 1/18S/1426:1428 | Single bulged A | homologous IL_8C3A_458 NA | |
IL_7OSA_063 | 1/18S/1290:1292, 1/18S/1323:1325 | Isolated non-canonical cWW pair | homologous IL_8C3A_459 NA | |
IL_7OSA_064 | 1/18S/1306:1308, 1/18S/1317:1318 | Minor groove platform | homologous IL_8C3A_460 NA | |
IL_7OSA_065 | 1/18S/1339:1342, 1/18S/1383:1385 | Isolated non-canonical cWW pair | homologous IL_8P9A_444 IL_87907.2 | |
IL_7OSA_257 | 1/18S/1345:1348, 1/18S/1377:1380 | No text annotation | homologous IL_8P9A_445 IL_78800.1 | |
IL_7OSA_067 | 1/18S/1352:1354, 1/18S/1369:1373 | No text annotation | ||
IL_7OSA_258 | 1/18S/1389:1391, 1/18S/1407:1412 | No text annotation | geometric IL_8P9A_447 IL_94684.1 | |
IL_7OSA_069 | 1/18S/1480:1487, 1/18S/1519:1527 | No text annotation | homologous IL_8P9A_448 IL_91698.1 | |
IL_7OSA_070 | 1/18S/1488:1494, 1/18S/1513:1518 | 180 degree turn | geometric IL_4V88_460 NA | |
IL_7OSA_071 | 1/18S/1495:1498, 1/18S/1509:1512 | No text annotation | homologous IL_8P9A_450 IL_77658.1 | |
IL_7OSA_072 | 1/18S/1540:1545, 1/18S/1566:1571 | No text annotation | homologous IL_8C3A_507 NA | |
IL_7OSA_073 | 1/18S/1636:1638, 1/18S/1764:1767 | No text annotation | homologous IL_8P9A_452 IL_61438.4 | |
IL_7OSA_074 | 1/18S/1638:1641, 1/18S/1760:1764 | No text annotation | homologous IL_8P9A_453 IL_65718.4 | |
IL_7OSA_075 | 1/18S/1642:1644, 1/18S/1757:1759 | Isolated non-canonical cWW pair | homologous IL_8P9A_454 IL_87907.2 | |
IL_7OSA_076 | 1/18S/1644:1647, 1/18S/1753:1757 | No text annotation | homologous IL_8C3A_473 NA | |
IL_7OSA_077 | 1/18S/1650:1652, 1/18S/1748:1750 | Isolated non-canonical cWW pair | homologous IL_8P9A_456 IL_87907.2 | |
IL_7OSA_078 | 1/18S/1653:1656, 1/18S/1744:1747 | Double sheared | homologous IL_8P9A_457 IL_09705.15 | |
IL_7OSA_079 | 1/18S/1656:1658, 1/18S/1743:1744 | Single bulged U | homologous IL_8P9A_458 IL_89505.4 | |
IL_7OSA_080 | 1/18S/1665:1667, 1/18S/1734:1736 | Isolated non-canonical cWW pair | homologous IL_8C3A_477 NA | |
IL_7OSA_081 | 1/18S/1669:1672, 1/18S/1729:1732 | Double sheared | homologous IL_8P9A_460 IL_09705.15 | |
IL_7OSA_082 | 1/18S/1672:1674, 1/18S/1727:1729 | Isolated non-canonical cWW pair | homologous IL_8P9A_461 IL_87907.2 | |
IL_7OSA_083 | 1/18S/1675:1678, 1/18S/1723:1726 | No text annotation | homologous IL_8P9A_462 IL_77658.1 | |
IL_7OSA_084 | 1/18S/1678:1682, 1/18S/1719:1723 | Triple sheared | homologous IL_8C3A_480 NA | |
IL_7OSA_085 | 1/18S/1686:1690, 1/18S/1711:1715 | No text annotation | ||
IL_7OSA_086 | 1/25S/7:8, 1/58S/150:152 | Single bulged C | homologous IL_8P9A_231 IL_61258.15 | |
IL_7OSA_087 | 1/25S/13:15, 1/58S/144:145 | Single bulged U | homologous IL_8P9A_232 IL_89505.4 | |
IL_7OSA_088 | 1/25S/27:28, 1/25S/56:58 | Single stack bend | homologous IL_8P9A_233 IL_90729.1 | |
IL_7OSA_089 | 1/25S/31:38, 1/25S/45:53 | tSH-tHW-tHH-tHS | homologous IL_8P9A_234 IL_84694.2 | |
IL_7OSA_090 | 1/25S/82:89, 1/25S/97:103 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8P9A_235 IL_65594.1 | |
IL_7OSA_091 | 1/25S/123:124, 1/25S/144:149 | No text annotation | homologous IL_8C3A_007 NA | |
IL_7OSA_092 | 1/25S/125:127, 1/25S/141:143 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
IL_7OSA_259 | 1/25S/163:165, 1/25S/257:258 | Single stack bend | homologous IL_8P9A_238 IL_90729.1 | |
IL_7OSA_094 | 1/25S/169:170, 1/25S/248:253 | No text annotation | geometric IL_5TBW_010 NA | |
IL_7OSA_260 | 1/25S/177:178, 1/25S/238:241 | No text annotation | ||
IL_7OSA_096 | 1/25S/189:191, 1/25S/204:205 | Single bulged U | homologous IL_8P9A_241 IL_89505.4 | |
IL_7OSA_097 | 1/25S/337:339, 1/58S/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
IL_7OSA_098 | 1/25S/376:379, 1/25S/390:403 | No text annotation | geometric IL_5TBW_014 NA | |
IL_7OSA_099 | 1/25S/404:410, 1/58S/13:19 | No text annotation | homologous IL_8P9A_244 IL_04021.2 | |
IL_7OSA_100 | 1/25S/429:431, 1/25S/628:630 | Isolated non-canonical cWW pair | homologous IL_8P9A_245 IL_07785.1 | |
IL_7OSA_102 | 1/25S/512:513, 1/25S/577:579 | Single bulged A | homologous IL_8P9A_246 IL_31462.6 | |
IL_7OSA_103 | 1/25S/517:525, 1/25S/567:573 | No text annotation | homologous IL_8P9A_247 IL_58126.1 | |
IL_7OSA_104 | 1/25S/531:538, 1/25S/553:561 | No text annotation | homologous IL_8P9A_248 IL_43858.1 | |
IL_7OSA_105 | 1/25S/668:670, 1/25S/792:794 | Isolated non-canonical cWW pair | homologous IL_8P9A_249 IL_87907.2 | |
IL_7OSA_106 | 1/25S/680:684, 1/25S/696:700 | No text annotation | homologous IL_8P9A_250 IL_74367.1 | |
IL_7OSA_243 | 1/25S/725:728, 1/25S/741:745 | No text annotation | homologous IL_8P9A_251 IL_23774.1 | |
IL_7OSA_108 | 1/25S/752:753, 1/25S/779:781 | Single bulged A | homologous IL_8P9A_252 IL_31462.6 | |
IL_7OSA_109 | 1/25S/755:756, 1/25S/775:777 | Single bulged U | homologous IL_8C3A_027 NA | |
IL_7OSA_110 | 1/25S/758:763, 1/25S/768:773 | No text annotation | homologous IL_8P9A_254 IL_85536.2 | |
IL_7OSA_111 | 1/25S/803:805, 1/25S/938:940 | Isolated non-canonical cWW pair | homologous IL_8P9A_255 IL_87907.2 | |
IL_7OSA_112 | 1/25S/805:809, 1/25S/931:938 | No text annotation | homologous IL_8P9A_256 IL_54041.2 | |
IL_7OSA_113 | 1/25S/828:829, 1/25S/895:897 | Single bulged A | homologous IL_8C3A_031 NA | |
IL_7OSA_114 | 1/25S/833:834, 1/25S/859:861 | Single bulged G | homologous IL_8P9A_257 IL_00225.13 | |
IL_7OSA_115 | 1/25S/834:838, 1/25S/855:859 | Triple sheared | homologous IL_8P9A_258 IL_50730.2 | |
IL_7OSA_116 | 1/25S/869:872, 1/25S/888:890 | No text annotation | homologous IL_8P9A_259 IL_51387.2 | |
IL_7OSA_117 | 1/25S/873:875, 1/25S/886:887 | Single bulged U | homologous IL_8P9A_260 IL_89505.4 | |
IL_7OSA_118 | 1/25S/907:909, 1/25S/919:923 | No text annotation | homologous IL_8P9A_261 IL_06549.2 | |
IL_7OSA_119 | 1/25S/954:956, 1/25S/965:967 | Isolated non-canonical cWW pair | homologous IL_8P9A_262 IL_28037.2 | |
IL_7OSA_120 | 1/25S/969:970, 1/25S/1111:1113 | Single stack bend | homologous IL_8P9A_263 IL_26793.1 | |
IL_7OSA_121 | 1/25S/977:982, 1/25S/1101:1104 | No text annotation | ||
IL_7OSA_122 | 1/25S/983:985, 1/25S/1099:1100 | Single bulged G | homologous IL_8C3A_040 NA | |
IL_7OSA_123 | 1/25S/991:997, 1/25S/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_8P9A_266 IL_29198.2 | |
IL_7OSA_124 | 1/25S/997:998, 1/25S/1050:1052 | Minor groove platform | homologous IL_8P9A_267 IL_51454.3 | |
IL_7OSA_125 | 1/25S/999:1004, 1/25S/1046:1049 | No text annotation | homologous IL_8P9A_268 IL_26222.2 | |
IL_7OSA_126 | 1/25S/1006:1009, 1/25S/1041:1044 | No text annotation | homologous IL_8C3A_481 NA | |
IL_7OSA_127 | 1/25S/1009:1011, 1/25S/1039:1041 | Isolated non-canonical cWW pair | homologous IL_8P9A_270 IL_87907.2 | |
IL_7OSA_128 | 1/25S/1069:1071, 1/25S/1087:1089 | Isolated non-canonical cWW pair | geometric IL_3RW6_004 IL_87907.2 | |
IL_7OSA_129 | 1/25S/1120:1122, 1/25S/1136:1138 | Isolated non-canonical cWW pair | homologous IL_8P9A_274 IL_87907.2 | |
IL_7OSA_131 | 1/25S/1167:1171, 1/25S/1328:1332 | UAA/GAN | homologous IL_8P9A_276 IL_38507.2 | |
IL_7OSA_132 | 1/25S/1173:1180, 1/25S/1325:1326 | SSU/LSU pseudoknot | homologous IL_8P9A_277 IL_41203.4 | |
IL_7OSA_133 | 1/25S/1180:1182, 1/25S/1324:1325 | Single bulged U | homologous IL_8P9A_278 IL_89505.4 | |
IL_7OSA_134 | 1/25S/1187:1194, 1/25S/1314:1319 | No text annotation | homologous IL_8C3A_054 NA | |
IL_7OSA_135 | 1/25S/1194:1205, 1/25S/1299:1314 | No text annotation | homologous IL_8C3A_055 NA | |
IL_7OSA_136 | 1/25S/1207:1209, 1/25S/1296:1297 | Single bulged U | homologous IL_8P9A_281 IL_89505.4 | |
IL_7OSA_137 | 1/25S/1218:1226, 1/25S/1283:1287 | Kink-turn | homologous IL_8C3A_057 NA | |
IL_7OSA_138 | 1/25S/1234:1238, 1/25S/1250:1254 | No text annotation | homologous IL_8P9A_283 IL_16218.2 | |
IL_7OSA_139 | 1/25S/1262:1266, 1/25S/1275:1277 | No text annotation | homologous IL_8P9A_284 IL_51387.2 | |
IL_7OSA_140 | 1/25S/1376:1378, 1/25S/1428:1431 | No text annotation | homologous IL_8P9A_285 IL_42997.3 | |
IL_7OSA_141 | 1/25S/1385:1387, 1/25S/1420:1421 | Single bulged A | homologous IL_8P9A_286 IL_31462.6 | |
IL_7OSA_142 | 1/25S/1388:1395, 1/25S/1415:1419 | Kink-turn | homologous IL_8P9A_287 IL_70923.9 | |
IL_7OSA_143 | 1/25S/1398:1400, 1/25S/1411:1412 | Single bulged A | homologous IL_8P9A_288 IL_31462.6 | |
IL_7OSA_144 | 1/25S/1444:1450, 1/25S/2354:2359 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_8P9A_289 IL_26307.2 | |
IL_7OSA_245 | 1/25S/1501:1505, 1/25S/1513:1515 | C-loop | homologous IL_8P9A_290 IL_63596.11 | |
IL_7OSA_146 | 1/25S/1532:1536, 1/25S/1585:1590 | UAA/GAN | homologous IL_8C3A_067 NA | |
IL_7OSA_147 | 1/25S/1618:1621, 1/25S/1824:1826 | Other IL | geometric IL_5TBW_064 NA | |
IL_7OSA_148 | 1/25S/1623:1625, 1/25S/1818:1822 | No text annotation | geometric IL_7ELQ_002 IL_07785.1 | |
IL_7OSA_247 | 1/25S/1623:1631, 1/25S/1811:1822 | No text annotation | ||
IL_7OSA_149 | 1/25S/1627:1631, 1/25S/1811:1816 | No text annotation | geometric IL_5TBW_066 NA | |
IL_7OSA_150 | 1/25S/1645:1649, 1/25S/1806:1810 | Triple sheared | geometric IL_5TBW_067 NA | |
IL_7OSA_151 | 1/25S/1661:1663, 1/25S/1786:1788 | Isolated non-canonical cWW pair | homologous IL_8P9A_296 IL_87907.2 | |
IL_7OSA_152 | 1/25S/1669:1670, 1/25S/1778:1780 | Single bulged C | homologous IL_8P9A_297 IL_61258.15 | |
IL_7OSA_153 | 1/25S/1670:1671, 1/25S/1776:1778 | Single stack bend | homologous IL_8P9A_298 IL_90729.1 | |
IL_7OSA_154 | 1/25S/1694:1698, 1/25S/1747:1752 | No text annotation | homologous IL_8P9A_299 IL_00981.1 | |
IL_7OSA_155 | 1/25S/1702:1707, 1/25S/1737:1743 | No text annotation | homologous IL_8P9A_300 IL_23038.1 | |
IL_7OSA_156 | 1/25S/1711:1717, 1/25S/1727:1733 | No text annotation | homologous IL_8P9A_301 IL_69543.3 | |
IL_7OSA_157 | 1/25S/1883:1889, 1/25S/2346:2349 | No text annotation | homologous IL_8C3A_080 NA | |
IL_7OSA_158 | 1/25S/1895:1897, 1/25S/2338:2340 | No text annotation | homologous IL_8P9A_303 IL_67095.2 | |
IL_7OSA_159 | 1/25S/1898:1901, 1/25S/2336:2337 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
IL_7OSA_248 | 1/25S/1898:1906, 1/25S/2333:2337 | No text annotation | homologous IL_8P9A_305 IL_22854.4 | |
IL_7OSA_160 | 1/25S/1901:1906, 1/25S/2333:2336 | Intercalated tWH | geometric IL_5TBW_077 NA | |
IL_7OSA_161 | 1/25S/1918:1923, 1/25S/1928:1934 | No text annotation | homologous IL_8C3A_084 NA | |
IL_7OSA_162 | 1/25S/1940:1942, 1/25S/2106:2108 | Isolated non-canonical cWW pair | homologous IL_8P9A_308 IL_87907.2 | |
IL_7OSA_163 | 1/25S/1947:1948, 1/25S/2098:2101 | No text annotation | homologous IL_8P9A_309 IL_73355.1 | |
IL_7OSA_164 | 1/25S/1950:1953, 1/25S/2094:2096 | No text annotation | ||
IL_7OSA_165 | 1/25S/2128:2129, 1/25S/2323:2325 | Single bulged A | homologous IL_8P9A_310 IL_31462.6 | |
IL_7OSA_166 | 1/25S/2156:2161, 1/25S/2173:2180 | No text annotation | homologous IL_8P9A_311 IL_20047.1 | |
IL_7OSA_167 | 1/25S/2196:2199, 1/25S/2245:2246 | Minor groove platform, major groove intercalation | homologous IL_8P9A_312 IL_95583.2 | |
IL_7OSA_168 | 1/25S/2200:2201, 1/25S/2241:2244 | Major groove intercalation | homologous IL_8P9A_313 IL_82107.4 | |
IL_7OSA_169 | 1/25S/2204:2206, 1/25S/2237:2238 | No text annotation | ||
IL_7OSA_249 | 1/25S/2204:2210, 1/25S/2235:2238 | No text annotation | ||
IL_7OSA_170 | 1/25S/2206:2210, 1/25S/2235:2237 | No text annotation | geometric IL_8C3A_508 NA | |
IL_7OSA_171 | 1/25S/2211:2217, 1/25S/2228:2234 | No text annotation | homologous IL_8P9A_316 IL_88116.2 | |
IL_7OSA_172 | 1/25S/2276:2277, 1/25S/2307:2310 | No text annotation | geometric IL_8C3A_094 NA | |
IL_7OSA_173 | 1/25S/2277:2288, 1/25S/2304:2307 | No text annotation | homologous IL_8P9A_318 IL_42218.2 | |
IL_7OSA_174 | 1/25S/2391:2394, 1/25S/2986:2988 | No text annotation | homologous IL_8P9A_319 IL_55516.2 | |
IL_7OSA_175 | 1/25S/2396:2398, 1/25S/2981:2984 | No text annotation | homologous IL_8C3A_097 NA | |
IL_7OSA_176 | 1/25S/2409:2411, 1/25S/2811:2812 | Single bulged U | homologous IL_8P9A_321 IL_89505.4 | |
IL_7OSA_177 | 1/25S/2412:2413, 1/25S/2807:2810 | Minor groove platform | homologous IL_8C3A_099 NA | |
IL_7OSA_178 | 1/25S/2423:2425, 1/25S/2604:2607 | No text annotation | homologous IL_8C3A_100 NA | |
IL_7OSA_179 | 1/25S/2444:2446, 1/25S/2500:2503 | Isolated non-canonical cWW pair | geometric IL_7A0S_078 IL_28037.2 | |
IL_7OSA_261 | 1/25S/2520:2526, 1/25S/2584:2587 | No text annotation | homologous IL_8CRE_106 IL_00555.1 | |
IL_7OSA_181 | 1/25S/2614:2615, 1/25S/2625:2627 | Single bulged A | homologous IL_8P9A_325 IL_31462.6 | |
IL_7OSA_182 | 1/25S/2666:2668, 1/25S/2686:2690 | No text annotation | homologous IL_8P9A_326 IL_61476.2 | |
IL_7OSA_183 | 1/25S/2718:2721, 1/25S/2735:2738 | No text annotation | homologous IL_8P9A_327 IL_85033.2 | |
IL_7OSA_184 | 1/25S/2770:2773, 1/25S/2787:2788 | Single stack bend with bulge | homologous IL_8C3A_110 NA | |
IL_7OSA_185 | 1/25S/2823:2824, 1/25S/2865:2867 | Major groove platform | geometric IL_5TBW_102 NA | |
IL_7OSA_250 | 1/25S/2823:2826, 1/25S/2863:2867 | No text annotation | homologous IL_8C3A_111 NA | |
IL_7OSA_186 | 1/25S/2824:2826, 1/25S/2863:2865 | Isolated non-canonical cWW pair | geometric IL_5TBW_103 NA | |
IL_7OSA_187 | 1/25S/2826:2828, 1/25S/2862:2863 | Major groove platform | geometric IL_5TBW_104 NA | |
IL_7OSA_188 | 1/25S/2828:2830, 1/25S/2858:2862 | No text annotation | homologous IL_8P9A_332 IL_51387.2 | |
IL_7OSA_189 | 1/25S/2835:2839, 1/25S/2849:2853 | No text annotation | homologous IL_8C3A_114 NA | |
IL_7OSA_190 | 1/25S/2876:2877, 1/25S/2949:2951 | No text annotation | homologous IL_8P9A_334 IL_07039.3 | |
IL_7OSA_191 | 1/25S/2879:2881, 1/25S/2943:2947 | No text annotation | homologous IL_8P9A_335 IL_07785.1 | |
IL_7OSA_192 | 1/25S/2881:2882, 1/25S/2940:2943 | No text annotation | homologous IL_8P9A_336 IL_42626.2 | |
IL_7OSA_193 | 1/25S/2889:2891, 1/25S/2912:2914 | Isolated non-canonical cWW pair | geometric IL_5TBW_110 NA | |
IL_7OSA_194 | 1/25S/2891:2892, 1/25S/2909:2912 | Major groove platform with intercalation | homologous IL_8C3A_119 NA | |
IL_7OSA_195 | 1/25S/2918:2920, 1/25S/2926:2928 | Isolated non-canonical cWW pair | homologous IL_8P9A_340 IL_87907.2 | |
IL_7OSA_196 | 1/25S/2960:2961, 1/25S/2970:2972 | Single bulged A | homologous IL_8C3A_122 NA | |
IL_7OSA_197 | 1/25S/3004:3007, 1/25S/3139:3144 | Double sheared | homologous IL_8P9A_342 IL_09705.15 | |
IL_7OSA_198 | 1/25S/3012:3014, 1/25S/3040:3042 | Isolated non-canonical cWW pair | homologous IL_8P9A_343 IL_28037.2 | |
IL_7OSA_199 | 1/25S/3018:3025, 1/25S/3030:3036 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8P9A_344 IL_04346.10 | |
IL_7OSA_200 | 1/25S/3047:3051, 1/25S/3091:3094 | No text annotation | homologous IL_8P9A_345 IL_83150.2 | |
IL_7OSA_201 | 1/25S/3054:3059, 1/25S/3084:3088 | No text annotation | homologous IL_8P9A_346 IL_21001.1 | |
IL_7OSA_202 | 1/25S/3063:3064, 1/25S/3077:3080 | No text annotation | homologous IL_8C3A_128 NA | |
IL_7OSA_203 | 1/25S/3103:3107, 1/25S/3127:3131 | UAA/GAN | homologous IL_8P9A_348 IL_38507.2 | |
IL_7OSA_262 | 1/25S/3164:3166, 1/25S/3284:3286 | Isolated non-canonical cWW pair | homologous IL_8CRE_130 IL_87907.2 | |
IL_7OSA_263 | 1/25S/3168:3170, 1/25S/3280:3282 | Isolated non-canonical cWW pair | homologous IL_8P9A_350 IL_28037.2 | |
IL_7OSA_206 | 1/25S/3177:3188, 1/25S/3204:3211 | No text annotation | ||
IL_7OSA_207 | 1/25S/3193:3194, 1/25S/3197:3199 | Single bulged U | geometric IL_5TBW_125 NA | |
IL_7OSA_208 | 1/25S/3225:3229, 1/25S/3258:3260 | No text annotation | homologous IL_8C3A_133 NA | |
IL_7OSA_209 | 1/25S/3233:3235, 1/25S/3252:3254 | Isolated non-canonical cWW pair | homologous IL_8P9A_354 IL_87907.2 | |
IL_7OSA_210 | 1/25S/3235:3238, 1/25S/3249:3252 | No text annotation | homologous IL_8P9A_355 IL_77658.1 | |
IL_7OSA_211 | 1/25S/3300:3303, 1/25S/3311:3314 | No text annotation | homologous IL_8P9A_356 IL_77658.1 | |
IL_7OSA_212 | 1/25S/3318:3320, 1/25S/3387:3388 | Single bulged U | homologous IL_8C3A_136 NA | |
IL_7OSA_213 | 1/25S/3324:3325, 1/25S/3381:3383 | Single bulged U | homologous IL_8C3A_137 NA | |
IL_7OSA_214 | 1/25S/3328:3330, 1/25S/3373:3378 | No text annotation | homologous IL_8P9A_359 IL_43622.1 | |
IL_7OSA_215 | 1/25S/3332:3337, 1/25S/3367:3371 | No text annotation | homologous IL_8P9A_360 IL_70411.2 | |
IL_7OSA_216 | 1/25S/3340:3342, 1/25S/3363:3364 | Single bulged U | homologous IL_8C3A_140 NA | |
IL_7OSA_217 | 1/25S/3342:3345, 1/25S/3360:3363 | Double sheared; A in syn | homologous IL_8P9A_362 IL_09705.15 | |
IL_7OSA_218 | 1/58S/44:64, 1/58S/96:100 | No text annotation | homologous IL_8C3A_150 NA | |
IL_7OSA_264 | 1/58S/64:66, 1/58S/93:96 | No text annotation | homologous IL_8CRE_150 IL_07785.1 | |
IL_7OSA_220 | 1/58S/68:69, 1/58S/89:91 | Single bulged U | homologous IL_8P9A_372 IL_89505.4 | |
IL_7OSA_221 | 1/58S/69:73, 1/58S/78:89 | No text annotation | ||
IL_7OSA_222 | 1/AB/15:16, 1/AB/63:65 | Single bulged A | homologous IL_8P9A_364 IL_31462.6 | |
IL_7OSA_223 | 1/AB/21:27, 1/AB/53:58 | No text annotation | homologous IL_8P9A_365 IL_18487.1 | |
IL_7OSA_224 | 1/AB/28:29, 1/AB/49:52 | No text annotation | homologous IL_8C3A_145 NA | |
IL_7OSA_225 | 1/AB/29:30, 1/AB/47:49 | Single stack bend | homologous IL_8C3A_146 NA | |
IL_7OSA_226 | 1/AB/32:36, 1/AB/41:45 | No text annotation | homologous IL_8C3A_147 NA | |
IL_7OSA_227 | 1/AB/72:80, 1/AB/100:106 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8P9A_369 IL_04346.10 | |
IL_7OSA_228 | 1/AB/84:87, 1/AB/94:96 | Isolated non-canonical cWW pair | homologous IL_8C3A_149 NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_7OSA_011 | No text annotation | ||
IL_7OSA_013 | No text annotation | ||
IL_7OSA_014 | No text annotation | ||
IL_7OSA_016 | No text annotation | ||
IL_7OSA_017 | Isolated non-canonical cWW pair | ||
IL_7OSA_024 | C-loop with extra cWW pair | ||
IL_7OSA_033 | No text annotation | ||
IL_7OSA_034 | No text annotation | ||
IL_7OSA_038 | No text annotation | ||
IL_7OSA_236 | Isolated cWS basepair | ||
IL_7OSA_061 | No text annotation | ||
IL_7OSA_066 | No text annotation | ||
IL_7OSA_239 | No text annotation | ||
IL_7OSA_068 | No text annotation | ||
IL_7OSA_240 | No text annotation | ||
IL_7OSA_241 | No text annotation | ||
IL_7OSA_093 | Other IL | ||
IL_7OSA_242 | No text annotation | ||
IL_7OSA_095 | No text annotation | ||
IL_7OSA_101 | No text annotation | ||
IL_7OSA_107 | Triple sheared related | ||
IL_7OSA_244 | Tandem non-canonical cWW pairs | ||
IL_7OSA_130 | No text annotation | ||
IL_7OSA_145 | No text annotation | ||
IL_7OSA_246 | No text annotation | ||
IL_7OSA_180 | No text annotation | ||
IL_7OSA_251 | No text annotation | ||
IL_7OSA_204 | Partly complementary | ||
IL_7OSA_205 | Tandem non-canonical cWW pairs | ||
IL_7OSA_219 | No text annotation | ||
IL_7OSA_229 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_7OSA_001 | 1/18S/41:42, 1/18S/433:439, 1/18S/464:466 | No text annotation | geometric J3_4V88_078 NA | |
J3_7OSA_029 | 1/18S/41:48, 1/18S/431:439, 1/18S/464:466 | No text annotation | homologous J3_8P9A_069 J3_46317.4 | |
J3_7OSA_002 | 1/18S/760:763, 1/18S/773:775, 1/18S/785:790 | No text annotation | homologous J3_8P9A_073 J3_97642.1 | |
J3_7OSA_003 | 1/18S/881:884, 1/18S/928:936, 1/18S/943:947 | No text annotation | homologous J3_8P9A_074 J3_76375.1 | |
J3_7OSA_004 | 1/18S/1037:1039, 1/18S/1079:1083, 1/18S/1090:1094 | No text annotation | homologous J3_8C3A_037 NA | |
J3_7OSA_005 | 1/18S/1161:1164, 1/18S/1581:1587, 1/18S/1609:1616 | No text annotation | homologous J3_8C3A_038 NA | |
J3_7OSA_006 | 1/18S/1168:1171, 1/18S/1468:1470, 1/18S/1574:1577 | No text annotation | geometric J3_4V88_036 NA | |
J3_7OSA_007 | 1/18S/1180:1187, 1/18S/1198:1209, 1/18S/1454:1458 | No text annotation | homologous J3_8C3A_040 NA | |
J3_7OSA_008 | 1/18S/1215:1220, 1/18S/1263:1267, 1/18S/1442:1448 | No text annotation | homologous J3_8C3A_041 NA | |
J3_7OSA_009 | 1/18S/1283:1288, 1/18S/1327:1332, 1/18S/1419:1424 | No text annotation | homologous J3_8P9A_080 J3_99563.1 | |
J3_7OSA_010 | 1/18S/1293:1294, 1/18S/1303:1306, 1/18S/1318:1322 | No text annotation | homologous J3_8P9A_081 J3_76043.3 | |
J3_7OSA_011 | 1/18S/1336:1338, 1/18S/1386:1389, 1/18S/1412:1415 | No text annotation | geometric J3_4V88_040 NA | |
J3_7OSA_044 | 1/18S/1336:1338, 1/18S/1386:1391, 1/18S/1407:1415 | No text annotation | homologous J3_8CRE_085 J3_88233.1 | |
J3_7OSA_012 | 1/18S/1470:1474, 1/18S/1533:1540, 1/18S/1571:1574 | No text annotation | homologous J3_8C3A_044 NA | |
J3_7OSA_013 | 1/25S/113:123, 1/25S/149:158, 1/25S/263:267 | No text annotation | homologous J3_8P9A_042 J3_19664.1 | |
J3_7OSA_032 | 1/25S/113:124, 1/25S/144:158, 1/25S/263:267 | No text annotation | ||
J3_7OSA_033 | 1/25S/185:189, 1/25S/205:214, 1/25S/226:231 | No text annotation | homologous J3_8P9A_044 J3_75408.1 | |
J3_7OSA_034 | 1/25S/340:356, 1/25S/363:368, 1/58S/21:24 | No text annotation | homologous J3_8P9A_045 J3_30040.2 | |
J3_7OSA_014 | 1/25S/369:376, 1/25S/403:404, 1/58S/19:20 | No text annotation | geometric J3_5TBW_002 NA | |
J3_7OSA_035 | 1/25S/369:379, 1/25S/390:404, 1/58S/19:20 | No text annotation | homologous J3_8P9A_047 J3_92134.2 | |
J3_7OSA_015 | 1/25S/502:503, 1/25S/588:597, 1/25S/606:611 | No text annotation | homologous J3_8P9A_048 J3_83726.1 | |
J3_7OSA_016 | 1/25S/814:820, 1/25S/905:907, 1/25S/923:926 | No text annotation | homologous J3_8C3A_003 NA | |
J3_7OSA_017 | 1/25S/829:831, 1/25S/863:867, 1/25S/892:895 | No text annotation | homologous J3_8C3A_004 NA | |
J3_7OSA_018 | 1/25S/986:987, 1/25S/1062:1066, 1/25S/1092:1098 | No text annotation | geometric J3_5TBW_006 NA | |
J3_7OSA_045 | 1/25S/1230:1232, 1/25S/1256:1262, 1/25S/1277:1279 | No text annotation | homologous J3_8P9A_052 J3_28621.5 | |
J3_7OSA_020 | 1/25S/1479:1485, 1/25S/1857:1859, 1/25S/1871:1874 | No text annotation | homologous J3_8P9A_053 J3_19545.2 | |
J3_7OSA_021 | 1/25S/1488:1491, 1/25S/1837:1843, 1/25S/1852:1854 | No text annotation | homologous J3_8P9A_054 J3_19545.2 | |
J3_7OSA_022 | 1/25S/1526:1531, 1/25S/1591:1595, 1/25S/1612:1613 | No text annotation | homologous J3_8P9A_055 J3_31965.2 | |
J3_7OSA_046 | 1/25S/1537:1542, 1/25S/1551:1562, 1/25S/1577:1584 | No text annotation | ||
J3_7OSA_023 | 1/25S/1631:1632, 1/25S/1641:1645, 1/25S/1810:1811 | No text annotation | geometric J3_8C3A_054 NA | |
J3_7OSA_038 | 1/25S/1631:1632, 1/25S/1641:1649, 1/25S/1806:1811 | No text annotation | ||
J3_7OSA_039 | 1/25S/1654:1658, 1/25S/1791:1792, 1/25S/1796:1801 | No text annotation | homologous J3_8P9A_058 J3_12393.2 | |
J3_7OSA_024 | 1/25S/2432:2435, 1/25S/2512:2517, 1/25S/2590:2597 | No text annotation | homologous J3_8C3A_008 NA | |
J3_7OSA_040 | 1/25S/2529:2532, 1/25S/2547:2563, 1/25S/2578:2581 | No text annotation | homologous J3_8P9A_060 J3_28639.1 | |
J3_7OSA_041 | 1/25S/2651:2653, 1/25S/2754:2765, 1/25S/2793:2798 | No text annotation | homologous J3_8P9A_061 J3_20992.1 | |
J3_7OSA_025 | 1/25S/2664:2666, 1/25S/2690:2692, 1/25S/2701:2706 | No text annotation | homologous J3_8P9A_062 J3_61124.2 | |
J3_7OSA_026 | 1/25S/2886:2889, 1/25S/2914:2916, 1/25S/2930:2936 | No text annotation | homologous J3_8P9A_063 J3_62630.1 | |
J3_7OSA_042 | 1/25S/3171:3176, 1/25S/3212:3220, 1/25S/3265:3279 | No text annotation | homologous J3_8P9A_064 J3_03190.1 | |
J3_7OSA_027 | 1/25S/3298:3300, 1/25S/3314:3318, 1/25S/3388:3390 | No text annotation | homologous J3_8P9A_065 J3_81015.1 | |
J3_7OSA_043 | 1/58S/44:45, 1/58S/58:64, 1/58S/96:100 | No text annotation | homologous J3_8P9A_067 J3_35667.2 | |
J3_7OSA_028 | 1/AB/9:14, 1/AB/66:67, 1/AB/111:112 | No text annotation | homologous J3_8C3A_059 NA | |
J4_7OSA_001 | 1/18S/99:107, 1/18S/307:309, 1/18S/357:361, 1/18S/383:384 | No text annotation | homologous J4_8C3A_021 NA | |
J4_7OSA_002 | 1/18S/622:624, 1/18S/975:980, 1/18S/1021:1032, 1/18S/1103:1104 | No text annotation | homologous J4_8P9A_022 J4_61885.6 | |
J4_7OSA_003 | 1/25S/112:113, 1/25S/267:272, 1/25S/293:299, 1/25S/316:319 | No text annotation | homologous J4_8P9A_012 J4_45801.6 | |
J4_7OSA_004 | 1/25S/1451:1457, 1/25S/1475:1476, 1/25S/1877:1880, 1/25S/2352:2353 | No text annotation | homologous J4_8P9A_014 J4_87855.1 | |
J4_7OSA_005 | 1/25S/1492:1496, 1/25S/1520:1525, 1/25S/1614:1615, 1/25S/1829:1836 | No text annotation | homologous J4_8P9A_015 J4_69051.6 | |
J4_7OSA_006 | 1/25S/1674:1675, 1/25S/1693:1694, 1/25S/1752:1753, 1/25S/1772:1773 | No text annotation | homologous J4_8C3A_005 NA | |
J4_7OSA_007 | 1/25S/2130:2134, 1/25S/2146:2150, 1/25S/2186:2190, 1/25S/2317:2322 | No text annotation | homologous J4_8P9A_017 J4_07509.2 | |
J4_7OSA_008 | 1/25S/2192:2194, 1/25S/2248:2249, 1/25S/2267:2276, 1/25S/2310:2315 | No text annotation | homologous J4_8P9A_018 J4_93343.1 | |
J4_7OSA_009 | 1/25S/2654:2658, 1/25S/2712:2716, 1/25S/2740:2742, 1/25S/2751:2753 | No text annotation | homologous J4_8P9A_019 J4_04930.6 | |
J4_7OSA_010 | 1/25S/3010:3012, 1/25S/3042:3043, 1/25S/3098:3100, 1/25S/3134:3136 | No text annotation | homologous J4_8P9A_020 J4_65356.1 | |
J4_7OSA_011 | 1/PSIT/7:10, 1/PSIT/26:28, 1/PSIT/44:50, 1/PSIT/66:67 | No text annotation | homologous J4_7MRL_001 J4_70449.28 | |
J5_7OSA_001 | 1/18S/31:35, 1/18S/473:479, 1/18S/509:516, 1/18S/536:546, 1/18S/592:595 | No text annotation | ||
J5_7OSA_002 | 1/18S/54:57, 1/18S/90:97, 1/18S/386:388, 1/18S/409:411, 1/18S/422:426 | No text annotation | homologous J5_8C3A_020 NA | |
J5_7OSA_003 | 1/25S/20:22, 1/58S/35:42, 1/58S/102:107, 1/58S/115:116, 1/58S/137:139 | No text annotation | homologous J5_8P9A_010 J5_01737.2 | |
J5_7OSA_004 | 1/25S/658:663, 1/25S/799:802, 1/25S/941:944, 1/25S/1375:1376, 1/25S/1431:1437 | No text annotation | homologous J5_8P9A_011 J5_63811.1 | |
J5_7OSA_005 | 1/25S/675:678, 1/25S/702:706, 1/25S/713:721, 1/25S/749:751, 1/25S/782:787 | No text annotation | homologous J5_8P9A_012 J5_23272.1 | |
J5_7OSA_006 | 1/25S/1906:1914, 1/25S/1938:1939, 1/25S/2109:2110, 1/25S/2114:2122, 1/25S/2331:2333 | No text annotation | homologous J5_8P9A_013 J5_62523.6 | |
J5_7OSA_007 | 1/25S/2399:2406, 1/25S/2815:2823, 1/25S/2867:2876, 1/25S/2951:2957, 1/25S/2975:2980 | No text annotation | ||
J5_7OSA_008 | 1/25S/2416:2419, 1/25S/2611:2614, 1/25S/2627:2628, 1/25S/2650:2651, 1/25S/2798:2804 | No text annotation | homologous J5_8P9A_015 J5_08912.1 | |
J6_7OSA_005 | 1/18S/633:641, 1/18S/693:699, 1/18S/739:744, 1/18S/807:817, 1/18S/854:865, 1/18S/965:966 | No text annotation | ||
J6_7OSA_006 | 1/18S/633:641, 1/18S/693:699, 1/18S/739:744, 1/18S/807:817, 1/18S/854:866, 1/18S/962:966 | No text annotation | ||
J6_7OSA_003 | 1/25S/22:27, 1/25S/58:68, 1/25S/75:79, 1/25S/106:110, 1/25S/321:331, 1/58S/32:35 | No text annotation | ||
J6_7OSA_004 | 1/25S/2416:2419, 1/25S/2611:2614, 1/25S/2627:2628, 1/25S/2650:2653, 1/25S/2754:2765, 1/25S/2793:2804 | No text annotation | ||
J7_7OSA_001 | 1/25S/949:954, 1/25S/967:968, 1/25S/1114:1117, 1/25S/1141:1146, 1/25S/1157:1161, 1/25S/1338:1339, 1/25S/1365:1370 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_7OSA_030 | No text annotation | ||
J3_7OSA_031 | No text annotation | ||
J3_7OSA_036 | No text annotation | ||
J3_7OSA_019 | No text annotation | ||
J3_7OSA_037 | No text annotation | ||
J6_7OSA_001 | No text annotation | ||
J6_7OSA_002 | No text annotation |
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