HL_7OSA_102

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSA_102 not in the Motif Atlas

Homologous match to HL_8P9A_176

Geometric discrepancy: 0.0742

The information below is about HL_8P9A_176

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

7OSA|1|25S|C|3025
7OSA|1|25S|G|3026
7OSA|1|25S|A|3027
7OSA|1|25S|G|3028
7OSA|1|25S|A|3029
7OSA|1|25S|G|3030

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eEF2

Elongation factor 2

Chain eL40

Ubiquitin

Chain uL6

60S ribosomal protein L9-A