HL_7OSA_132

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUUCAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSA_132 not in the Motif Atlas

Homologous match to HL_8WND_005

Geometric discrepancy: 0.2346

The information below is about HL_8WND_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7OSA|1|PSIT|G|54
7OSA|1|PSIT|U|55
7OSA|1|PSIT|U|56
7OSA|1|PSIT|C|57
7OSA|1|PSIT|A|58
7OSA|1|PSIT|A|59
7OSA|1|PSIT|A|60
7OSA|1|PSIT|U|61
7OSA|1|PSIT|C|62

Current chains

Chain PSIT

Psite tRNA-Phe

Nearby chains

Chain 25S

Large subunit ribosomal RNA; LSU rRNA