HL_7OSM_002

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAAUACAG

Length

8 nucleotides

Bulged bases

7OSM|1|18S|U|77

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_002 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1612

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7OSM|1|18S|C|70
7OSM|1|18S|A|71
7OSM|1|18S|A|72
7OSM|1|18S|U|77
7OSM|1|18S|A|78
7OSM|1|18S|C|79
7OSM|1|18S|A|80
7OSM|1|18S|G|81

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS6

40S ribosomal protein S6