RNA 3D Hub //

7OSM Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7OSM_0011/18S/7:17No text annotation
homologous
HL_4V88_186
NA
HL_7OSM_0031/18S/154:160GNRA related
homologous
HL_4V88_188
NA
HL_7OSM_0051/18S/243:250T-loop with 1 bulged base
homologous
HL_4V88_191
NA
HL_7OSM_0061/18S/275:281No text annotation
HL_7OSM_0071/18S/330:338GNRA related
homologous
HL_4V88_193
NA
HL_7OSM_0081/18S/368:373No text annotation
homologous
HL_4V88_194
NA
HL_7OSM_0091/18S/393:404No text annotation
homologous
HL_4V88_195
NA
HL_7OSM_0101/18S/414:419UNCG
homologous
HL_4V88_196
NA
HL_7OSM_0111/18S/450:456No text annotation
homologous
HL_4V88_197
NA
HL_7OSM_0121/18S/486:501No text annotation
HL_7OSM_0131/18S/520:532No text annotation
geometric
HL_4V88_199
NA
HL_7OSM_0141/18S/569:574GNRA variation
homologous
HL_4V88_200
NA
HL_7OSM_1291/18S/701:737No text annotation
HL_7OSM_0171/18S/764:772No text annotation
homologous
HL_4V88_203
NA
HL_7OSM_0181/18S/777:783No text annotation
geometric
HL_8C3A_054
NA
HL_7OSM_1221/18S/900:909No text annotation
homologous
HL_8P9A_209
HL_75293.5
HL_7OSM_0211/18S/937:942GNRA
homologous
HL_4V88_207
NA
HL_7OSM_0221/18S/997:1007No text annotation
geometric
HL_4LFB_017
HL_75293.5
HL_7OSM_1231/18S/1055:1064No text annotation
geometric
HL_1WZ2_007
HL_75660.5
HL_7OSM_0241/18S/1084:1089GNRA
homologous
HL_4V88_210
NA
HL_7OSM_0251/18S/1121:1126GNRA
homologous
HL_4V88_211
NA
HL_7OSM_1241/18S/1188:1197No text annotation
homologous
HL_8P9A_215
HL_50779.4
HL_7OSM_0271/18S/1238:1247Anticodon loop related
homologous
HL_4V88_213
NA
HL_7OSM_0281/18S/1296:1301GNRA
homologous
HL_4V88_214
NA
HL_7OSM_0291/18S/1309:1316No text annotation
homologous
HL_4V88_215
NA
HL_7OSM_0301/18S/1359:1364No text annotation
geometric
HL_5J7L_143
HL_75660.5
HL_7OSM_0311/18S/1396:1402GNRA related
geometric
HL_3OXE_002
HL_04783.2
HL_7OSM_0321/18S/1501:1506GNRA
homologous
HL_4V88_218
NA
HL_7OSM_0331/18S/1550:1561No text annotation
homologous
HL_4V88_219
NA
HL_7OSM_0341/18S/1594:1602No text annotation
homologous
HL_4V88_220
NA
HL_7OSM_0351/18S/1687:1714No text annotation
HL_7OSM_0361/18S/1778:1783GNRA variation
homologous
HL_4V88_222
NA
HL_7OSM_0371/25S/38:45No text annotation
homologous
HL_5TBW_001
NA
HL_7OSM_0381/25S/69:74No text annotation
homologous
HL_5TBW_002
NA
HL_7OSM_0391/25S/90:96No text annotation
homologous
HL_8C3A_003
NA
HL_7OSM_0401/25S/132:136No text annotation
homologous
HL_8C3A_004
NA
HL_7OSM_0411/25S/194:201T-loop with 2 stacked bulged bases
homologous
HL_8C3A_005
NA
HL_7OSM_0421/25S/208:212No text annotation
homologous
HL_5TBW_006
NA
HL_7OSM_0431/25S/216:224T-loop with unstacked turn
homologous
HL_5TBW_007
NA
HL_7OSM_0441/25S/278:287No text annotation
homologous
HL_8C3A_008
NA
HL_7OSM_0451/25S/303:312Pseudoknot geometry
geometric
HL_4QLM_002
HL_77600.2
HL_7OSM_0461/25S/357:362GNRA
homologous
HL_5TBW_010
NA
HL_7OSM_0471/25S/382:387GNRA
homologous
HL_8C3A_011
NA
HL_7OSM_0481/25S/543:548No text annotation
homologous
HL_5TBW_012
NA
HL_7OSM_1251/25S/599:604GNRA
homologous
HL_8P9A_125
HL_37824.7
HL_7OSM_0501/25S/640:649T-loop with 2 stacked bulged bases
homologous
HL_5TBW_014
NA
HL_7OSM_0511/25S/686:694No text annotation
homologous
HL_8C3A_015
NA
HL_7OSM_0521/25S/707:712GNRA
homologous
HL_8C3A_016
NA
HL_7OSM_0531/25S/732:737GNRA
homologous
HL_5TBW_017
NA
HL_7OSM_0541/25S/763:768No text annotation
homologous
HL_5TBW_018
NA
HL_7OSM_0551/25S/844:849GNRA
homologous
HL_5TBW_019
NA
HL_7OSM_0561/25S/876:885No text annotation
homologous
HL_5TBW_020
NA
HL_7OSM_0571/25S/910:918No text annotation
homologous
HL_5TBW_021
NA
HL_7OSM_0581/25S/958:963Externally structured
homologous
HL_8C3A_022
NA
HL_7OSM_0601/25S/1076:1083No text annotation
homologous
HL_8C3A_024
NA
HL_7OSM_0611/25S/1126:1132GNRA
homologous
HL_8C3A_025
NA
HL_7OSM_0621/25S/1148:1155No text annotation
homologous
HL_8C3A_026
NA
HL_7OSM_0631/25S/1239:1249No text annotation
homologous
HL_8C3A_027
NA
HL_7OSM_0641/25S/1267:1274GNRA wlth tandem sheared
homologous
HL_8C3A_028
NA
HL_7OSM_0651/25S/1347:1357No text annotation
HL_7OSM_0661/25S/1403:1408GNRA
homologous
HL_8C3A_030
NA
HL_7OSM_0671/25S/1462:1470T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_7OSM_0681/25S/1506:1512Pseudoknot geometry with 3' bulge
homologous
HL_5TBW_032
NA
HL_7OSM_0691/25S/1544:1549GNRA variation
homologous
HL_5TBW_033
NA
HL_7OSM_0701/25S/1561:1579No text annotation
HL_7OSM_0711/25S/1599:1608No text annotation
homologous
HL_8C3A_035
NA
HL_7OSM_0721/25S/1634:1639GNRA
homologous
HL_5TBW_036
NA
HL_7OSM_0731/25S/1680:1688No text annotation
homologous
HL_8C3A_037
NA
HL_7OSM_0741/25S/1719:1725No text annotation
homologous
HL_5TBW_038
NA
HL_7OSM_0751/25S/1760:1765No text annotation
geometric
HL_4WF9_011
HL_75660.5
HL_7OSM_0761/25S/1792:1796Mini UNCG
homologous
HL_5TBW_040
NA
HL_7OSM_0771/25S/1844:1851No text annotation
homologous
HL_5TBW_041
NA
HL_7OSM_0781/25S/1862:1868GNRA
homologous
HL_5TBW_042
NA
HL_7OSM_0791/25S/1923:1928UNCG
homologous
HL_8C3A_043
NA
HL_7OSM_0811/25S/2110:2114No text annotation
homologous
HL_8C3A_045
NA
HL_7OSM_0821/25S/2135:2145No text annotation
homologous
HL_8C3A_046
NA
HL_7OSM_0831/25S/2164:2170GNRA
homologous
HL_8C3A_047
NA
HL_7OSM_0841/25S/2220:2225GNRA
homologous
HL_5TBW_048
NA
HL_7OSM_0851/25S/2253:2263No text annotation
homologous
HL_5TBW_049
NA
HL_7OSM_0861/25S/2292:2300No text annotation
homologous
HL_5TBW_050
NA
HL_7OSM_0871/25S/2369:2378No text annotation
homologous
HL_8C3A_051
NA
HL_7OSM_0891/25S/2534:2545No text annotation
HL_7OSM_0901/25S/2568:2573No text annotation
homologous
HL_8C3A_054
NA
HL_7OSM_0911/25S/2616:2624No text annotation
homologous
HL_8C3A_055
NA
HL_7OSM_0921/25S/2633:2645No text annotation
homologous
HL_5TBW_055
NA
HL_7OSM_0931/25S/2673:2681No text annotation
homologous
HL_8C3A_057
NA
HL_7OSM_0941/25S/2693:2700Pseudoknot geometry
homologous
HL_5TBW_057
NA
HL_7OSM_0951/25S/2724:2732No text annotation
homologous
HL_8C3A_059
NA
HL_7OSM_0961/25S/2744:2749GNRA
homologous
HL_8C3A_060
NA
HL_7OSM_0971/25S/2776:2784Pseudoknot geometry
homologous
HL_8C3A_061
NA
HL_7OSM_0981/25S/2840:2848No text annotation
homologous
HL_5TBW_061
NA
HL_7OSM_0991/25S/2897:2904No text annotation
homologous
HL_8C3A_063
NA
HL_7OSM_1001/25S/2920:2926No text annotation
homologous
HL_5TBW_063
NA
HL_7OSM_1011/25S/2963:2968GNRA
homologous
HL_8C3A_065
NA
HL_7OSM_1021/25S/3025:3030GNRA
homologous
HL_8C3A_066
NA
HL_7OSM_1031/25S/3068:3073Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_7OSM_1041/25S/3110:3124No text annotation
homologous
HL_8C3A_068
NA
HL_7OSM_1051/25S/3194:3197No text annotation
homologous
HL_5TBW_068
NA
HL_7OSM_1061/25S/3240:3247No text annotation
homologous
HL_5TBW_069
NA
HL_7OSM_1071/25S/3303:3311No text annotation
homologous
HL_8C3A_071
NA
HL_7OSM_1081/25S/3350:3353Mini UNCG
homologous
HL_5TBW_071
NA
HL_7OSM_1091/58S/47:56Pseudoknot with intercalation
geometric
HL_7A0S_001
HL_93438.2
HL_7OSM_1271/58S/69:89No text annotation
homologous
HL_8P9A_187
HL_51921.1
HL_7OSM_1101/58S/73:78GNRA variation
geometric
HL_5TBW_074
NA
HL_7OSM_1111/58S/108:114No text annotation
homologous
HL_5TBW_075
NA
HL_7OSM_1121/58S/124:129No text annotation
homologous
HL_5TBW_076
NA
HL_7OSM_1131/AB/36:41No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_7OSM_1141/AB/88:93GNRA
homologous
HL_5TBW_186
NA
HL_7OSM_1151/ASIT/13:22tRNA D-loop
HL_04642.1
HL_7OSM_1161/ASIT/31:39tRNA anticodon loop
HL_06059.6
HL_7OSM_1171/ASIT/53:62No text annotation
HL_19210.3
HL_7OSM_1181/PSIT/13:23No text annotation
homologous
HL_1YFG_001
NA
HL_7OSM_1191/PSIT/32:40tRNA anticodon loop
homologous
HL_4TUE_034
HL_06059.6
HL_7OSM_1201/PSIT/53:63No text annotation
homologous
HL_4V7M_040
HL_67079.1

Problematic loops

#loop idProblemSequence
HL_7OSM_002No text annotation
HL_7OSM_004No text annotation
HL_7OSM_015No text annotation
HL_7OSM_016No text annotation
HL_7OSM_121No text annotation
HL_7OSM_019No text annotation
HL_7OSM_020No text annotation
HL_7OSM_023No text annotation
HL_7OSM_026No text annotation
HL_7OSM_049GNRA with extra cWW
HL_7OSM_059No text annotation
HL_7OSM_080No text annotation
HL_7OSM_088No text annotation
HL_7OSM_126No text annotation
HL_7OSM_128No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7OSM_0011/18S/24:26,
1/18S/600:601		Single bulged C
homologous
IL_4V88_384
NA
IL_7OSM_0021/18S/35:37,
1/18S/471:473		Isolated non-canonical cWW pair
geometric
IL_4V88_385
NA
IL_7OSM_0031/18S/37:41,
1/18S/466:471		Triple sheared related
homologous
IL_4V88_386
NA
IL_7OSM_0041/18S/42:48,
1/18S/431:433		No text annotation
homologous
IL_4V88_387
NA
IL_7OSM_0051/18S/50:52,
1/18S/428:429		Minor groove platform
homologous
IL_4V88_388
NA
IL_7OSM_0061/18S/58:63,
1/18S/87:89		No text annotation
homologous
IL_4V88_389
NA
IL_7OSM_0071/18S/64:69,
1/18S/82:86		No text annotation
homologous
IL_4V88_390
NA
IL_7OSM_0081/18S/109:112,
1/18S/302:305		Tandem non-canonical cWW pairs
homologous
IL_4V88_391
NA
IL_7OSM_0091/18S/113:116,
1/18S/300:301		Multiple bulged bases
homologous
IL_4V88_392
NA
IL_7OSM_0101/18S/117:122,
1/18S/295:299		No text annotation
homologous
IL_4V88_393
NA
IL_7OSM_0111/18S/142:149,
1/18S/165:172		tWH-tWH-tHW-tHW
homologous
IL_4V88_394
NA
IL_7OSM_0121/18S/150:152,
1/18S/162:164		Isolated non-canonical cWW contact
homologous
IL_4V88_395
NA
IL_7OSM_2551/18S/204:206,
1/18S/259:263		No text annotation
homologous
IL_8CRE_403
IL_51387.2
IL_7OSM_2561/18S/206:208,
1/18S/257:259		No text annotation
homologous
IL_8CRE_404
IL_28037.2
IL_7OSM_0151/18S/265:267,
1/18S/288:289		Single bulged A
homologous
IL_4V88_399
NA
IL_7OSM_0161/18S/270:273,
1/18S/283:285		No text annotation
homologous
IL_4V88_400
NA
IL_7OSM_0171/18S/311:316,
1/18S/348:355		Kink-turn with non-sequential stacking
homologous
IL_4V88_402
NA
IL_7OSM_0181/18S/318:323,
1/18S/345:346		No text annotation
geometric
IL_5Y58_001
IL_59877.1
IL_7OSM_0191/18S/363:365,
1/18S/376:381		No text annotation
homologous
IL_4V88_404
NA
IL_7OSM_0201/18S/389:391,
1/18S/406:408		Isolated cWH basepair
homologous
IL_4V88_405
NA
IL_7OSM_0211/18S/411:413,
1/18S/420:422		Isolated near basepair
homologous
IL_4V88_406
NA
IL_7OSM_0221/18S/439:441,
1/18S/463:464		Single bulged U
homologous
IL_4V88_407
NA
IL_7OSM_0231/18S/443:447,
1/18S/460:461		C-loop
geometric
IL_5J7L_018
IL_03109.3
IL_7OSM_0241/18S/447:448,
1/18S/458:460		Single bulged G
geometric
IL_5J7L_019
IL_00225.13
IL_7OSM_0251/18S/481:484,
1/18S/503:507		No text annotation
geometric
IL_1GID_008
NA
IL_7OSM_2241/18S/517:518,
1/18S/533:535		Minor groove platform
homologous
IL_8C3A_501
NA
IL_7OSM_0271/18S/518:520,
1/18S/532:533		Minor groove platform
homologous
IL_4V88_412
NA
IL_7OSM_0281/18S/550:557,
1/18S/587:588		SSU/LSU pseudoknot
geometric
IL_4V88_413
NA
IL_7OSM_0291/18S/557:559,
1/18S/586:587		Single bulged U
homologous
IL_4V88_414
NA
IL_7OSM_0301/18S/562:568,
1/18S/575:583		Kink-turn related
homologous
IL_4V88_415
NA
IL_7OSM_0311/18S/616:622,
1/18S/1104:1105		No text annotation
homologous
IL_4V88_416
NA
IL_7OSM_0321/18S/624:626,
1/18S/973:975		Isolated non-canonical cWW pair
homologous
IL_4V88_417
NA
IL_7OSM_0331/18S/627:631,
1/18S/968:972		tSH-tHW-tHS
homologous
IL_4V88_418
NA
IL_7OSM_0341/18S/646:648,
1/18S/686:688		Isolated non-canonical cWW pair
homologous
IL_4V88_419
NA
IL_7OSM_0351/18S/746:747,
1/18S/802:805		Major groove minor groove platform; mini C-loop
homologous
IL_4V88_423
NA
IL_7OSM_0361/18S/748:750,
1/18S/799:801		Isolated non-canonical cWW pair
homologous
IL_4V88_424
NA
IL_7OSM_0371/18S/751:753,
1/18S/794:798		Minor groove platform with extra cWW
geometric
IL_5J7L_006
IL_90351.1
IL_7OSM_0381/18S/753:759,
1/18S/791:794		No text annotation
homologous
IL_8C3A_433
NA
IL_7OSM_2251/18S/817:822,
1/18S/850:854		No text annotation
homologous
IL_8P9A_416
NA
IL_7OSM_0401/18S/865:866,
1/18S/962:965		Major groove platform; stack outside cWW
homologous
IL_4V88_428
NA
IL_7OSM_2261/18S/868:869,
1/18S/958:960		Single bulged U
geometric
IL_6UFH_004
IL_89505.4
IL_7OSM_0421/18S/871:874,
1/18S/953:956		Tandem non-canonical cWW pairs
geometric
IL_4V88_430
NA
IL_7OSM_0431/18S/874:878,
1/18S/950:953		Tandem non-canonical cWW pairs
homologous
IL_4V88_431
NA
IL_7OSM_0441/18S/885:888,
1/18S/924:927		Tandem non-canonical cWW pairs
homologous
IL_4V88_432
NA
IL_7OSM_0451/18S/893:899,
1/18S/910:919		Kink-turn related
homologous
IL_8C3A_440
NA
IL_7OSM_0461/18S/985:990,
1/18S/1014:1016		Other IL
geometric
IL_4V88_435
NA
IL_7OSM_0471/18S/990:994,
1/18S/1010:1014		tSH-tHW-tHS
homologous
IL_4V88_436
NA
IL_7OSM_0491/18S/1034:1036,
1/18S/1095:1101		No text annotation
homologous
IL_4V88_437
NA
IL_7OSM_0501/18S/1041:1044,
1/18S/1074:1077		Tandem non-canonical cWW pairs
homologous
IL_4V88_438
NA
IL_7OSM_0511/18S/1051:1053,
1/18S/1066:1067		No text annotation
IL_7OSM_0521/18S/1111:1118,
1/18S/1129:1134		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4V88_440
NA
IL_7OSM_0531/18S/1146:1147,
1/18S/1630:1632		Single bulged A
homologous
IL_4V88_441
NA
IL_7OSM_0541/18S/1149:1151,
1/18S/1627:1628		Single bulged G
homologous
IL_4V88_442
NA
IL_7OSM_0551/18S/1157:1160,
1/18S/1617:1621		C-loop
geometric
IL_1KOG_007
IL_63596.11
IL_7OSM_0561/18S/1173:1175,
1/18S/1464:1466		Isolated non-canonical cWW pair
homologous
IL_4V88_444
NA
IL_7OSM_0571/18S/1177:1179,
1/18S/1459:1462		Isolated non-canonical cWW pair
geometric
IL_4V88_470
NA
IL_7OSM_0581/18S/1213:1215,
1/18S/1448:1450		Isolated non-canonical cWW pair
homologous
IL_4V88_446
NA
IL_7OSM_0591/18S/1234:1237,
1/18S/1248:1251		Tandem non-canonical cWW pairs
geometric
IL_6DTD_001
IL_25872.4
IL_7OSM_2481/18S/1268:1270,
1/18S/1440:1441		Single bulged U
homologous
IL_8C3A_455
NA
IL_7OSM_2271/18S/1272:1278,
1/18S/1430:1438		No text annotation
homologous
IL_8P9A_439
IL_86012.1
IL_7OSM_2281/18S/1280:1281,
1/18S/1426:1428		Single bulged A
homologous
IL_8C3A_458
NA
IL_7OSM_0631/18S/1290:1292,
1/18S/1323:1325		Isolated cWH basepair
homologous
IL_4V88_453
NA
IL_7OSM_0641/18S/1306:1308,
1/18S/1317:1318		Minor groove platform
geometric
IL_4V88_388
NA
IL_7OSM_0651/18S/1339:1342,
1/18S/1383:1385		Isolated non-canonical cWW pair
geometric
IL_1XJR_003
IL_87907.2
IL_7OSM_2491/18S/1342:1348,
1/18S/1377:1383		No text annotation
IL_7OSM_0671/18S/1350:1354,
1/18S/1369:1375		No text annotation
IL_7OSM_2291/18S/1350:1356,
1/18S/1367:1375		No text annotation
IL_7OSM_0681/18S/1389:1391,
1/18S/1407:1412		No text annotation
homologous
IL_8C3A_465
NA
IL_7OSM_2301/18S/1478:1487,
1/18S/1519:1529		No text annotation
IL_7OSM_0691/18S/1488:1494,
1/18S/1513:1518		180 degree turn
homologous
IL_4V88_460
NA
IL_7OSM_0701/18S/1495:1498,
1/18S/1509:1512		Tandem non-canonical cWW pairs
homologous
IL_4V88_461
NA
IL_7OSM_2501/18S/1540:1545,
1/18S/1566:1571		No text annotation
homologous
IL_8C3A_507
NA
IL_7OSM_0721/18S/1636:1638,
1/18S/1764:1767		No text annotation
homologous
IL_4V88_463
NA
IL_7OSM_0731/18S/1638:1641,
1/18S/1760:1764		No text annotation
geometric
IL_4V88_464
NA
IL_7OSM_0741/18S/1642:1644,
1/18S/1757:1759		Isolated non-canonical cWW pair
homologous
IL_4V88_465
NA
IL_7OSM_0751/18S/1644:1647,
1/18S/1753:1757		Tandem non-canonical cWW pairs
geometric
IL_3WBM_002
IL_85033.2
IL_7OSM_0761/18S/1650:1652,
1/18S/1748:1750		Isolated non-canonical cWW pair
homologous
IL_4V88_467
NA
IL_7OSM_0771/18S/1653:1656,
1/18S/1744:1747		Double sheared
homologous
IL_4V88_468
NA
IL_7OSM_0781/18S/1656:1658,
1/18S/1743:1744		Single bulged U
geometric
IL_4V88_469
NA
IL_7OSM_0791/18S/1665:1667,
1/18S/1734:1736		Isolated non-canonical cWW pair
homologous
IL_4V88_470
NA
IL_7OSM_0801/18S/1669:1672,
1/18S/1729:1732		Double sheared
geometric
IL_4V88_471
NA
IL_7OSM_0811/18S/1672:1674,
1/18S/1727:1729		Isolated non-canonical cWW pair
homologous
IL_4V88_472
NA
IL_7OSM_0821/18S/1675:1678,
1/18S/1723:1726		Tandem non-canonical cWW pairs
geometric
IL_4V88_473
NA
IL_7OSM_0831/18S/1678:1682,
1/18S/1719:1723		Triple sheared
homologous
IL_4V88_474
NA
IL_7OSM_0841/25S/7:8,
1/58S/150:152		Single bulged C
homologous
IL_8C3A_002
NA
IL_7OSM_0851/25S/13:15,
1/58S/144:145		Single bulged U
homologous
IL_8C3A_003
NA
IL_7OSM_0861/25S/27:28,
1/25S/56:58		No text annotation
homologous
IL_8C3A_004
NA
IL_7OSM_0871/25S/31:38,
1/25S/45:53		tSH-tHW-tHH-tHS
geometric
IL_5TBW_005
NA
IL_7OSM_0881/25S/82:89,
1/25S/97:103		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_006
NA
IL_7OSM_0891/25S/123:124,
1/25S/144:149		No text annotation
geometric
IL_5TBW_007
NA
IL_7OSM_0901/25S/125:127,
1/25S/141:143		Isolated non-canonical cWW pair
homologous
IL_8C3A_008
NA
IL_7OSM_2511/25S/164:166,
1/25S/256:257		Single stack bend
homologous
IL_8P9A_238
IL_90729.1
IL_7OSM_2521/25S/169:170,
1/25S/248:253		No text annotation
IL_7OSM_2531/25S/177:178,
1/25S/238:241		Major groove platform
geometric
IL_5J7L_393
IL_07039.3
IL_7OSM_2351/25S/182:185,
1/25S/232:234		No text annotation
geometric
IL_4N0T_004
IL_99358.1
IL_7OSM_0941/25S/183:185,
1/25S/232:233		Single stack bend
geometric
IL_4LFB_041
IL_90729.1
IL_7OSM_0951/25S/337:339,
1/58S/25:26		Single bulged A
homologous
IL_8C3A_014
NA
IL_7OSM_0961/25S/376:379,
1/25S/390:403		No text annotation
homologous
IL_8C3A_015
NA
IL_7OSM_0971/25S/404:410,
1/58S/13:19		Triple sheared with non-canonical cWW
geometric
IL_5TBW_015
NA
IL_7OSM_0981/25S/429:431,
1/25S/628:630		Isolated non-canonical cWW pair
homologous
IL_5TBW_016
NA
IL_7OSM_1001/25S/512:513,
1/25S/577:579		Single bulged A
homologous
IL_8C3A_020
NA
IL_7OSM_1011/25S/517:525,
1/25S/567:573		No text annotation
homologous
IL_5TBW_019
NA
IL_7OSM_2541/25S/530:538,
1/25S/553:562		No text annotation
IL_7OSM_1031/25S/668:670,
1/25S/792:794		Isolated non-canonical cWW pair
homologous
IL_8C3A_023
NA
IL_7OSM_1041/25S/680:684,
1/25S/696:700		No text annotation
homologous
IL_5TBW_022
NA
IL_7OSM_1051/25S/725:728,
1/25S/741:745		UAA/GAN
homologous
IL_5TBW_023
NA
IL_7OSM_1061/25S/752:753,
1/25S/779:781		Single bulged A
homologous
IL_8C3A_026
NA
IL_7OSM_1071/25S/755:756,
1/25S/775:777		Single bulged U
homologous
IL_5TBW_025
NA
IL_7OSM_1081/25S/758:763,
1/25S/768:773		No text annotation
homologous
IL_8C3A_028
NA
IL_7OSM_1091/25S/803:805,
1/25S/938:940		Isolated non-canonical cWW pair
geometric
IL_5TBW_027
NA
IL_7OSM_1101/25S/805:809,
1/25S/931:938		No text annotation
homologous
IL_8C3A_030
NA
IL_7OSM_1111/25S/828:829,
1/25S/895:897		Single bulged A
geometric
IL_4V9F_025
IL_31462.6
IL_7OSM_1121/25S/833:834,
1/25S/859:861		Single bulged G
geometric
IL_5TBW_029
NA
IL_7OSM_1131/25S/834:838,
1/25S/855:859		Triple sheared
homologous
IL_8C3A_033
NA
IL_7OSM_1141/25S/869:872,
1/25S/888:890		Major groove platform with extra cWW
homologous
IL_8C3A_034
NA
IL_7OSM_1151/25S/873:875,
1/25S/886:887		Single bulged U
homologous
IL_5TBW_032
NA
IL_7OSM_1161/25S/907:909,
1/25S/919:923		Multiple bulged bases
geometric
IL_5TBW_033
NA
IL_7OSM_1171/25S/969:970,
1/25S/1111:1113		No text annotation
homologous
IL_8C3A_038
NA
IL_7OSM_1181/25S/977:982,
1/25S/1101:1104		No text annotation
IL_7OSM_1191/25S/983:985,
1/25S/1099:1100		Single bulged G
homologous
IL_8C3A_040
NA
IL_7OSM_1201/25S/991:997,
1/25S/1052:1058		No text annotation
homologous
IL_8C3A_041
NA
IL_7OSM_1211/25S/997:998,
1/25S/1050:1052		Minor groove platform
geometric
IL_5TBW_039
NA
IL_7OSM_1221/25S/999:1004,
1/25S/1046:1049		C-loop with bulged stacked A's
homologous
IL_8C3A_043
NA
IL_7OSM_1231/25S/1006:1009,
1/25S/1041:1044		Tandem non-canonical cWW pairs
geometric
IL_5TBW_041
NA
IL_7OSM_1241/25S/1009:1011,
1/25S/1039:1041		Isolated non-canonical cWW pair
homologous
IL_8C3A_045
NA
IL_7OSM_2381/25S/1014:1020,
1/25S/1032:1036		No text annotation
IL_7OSM_1261/25S/1069:1072,
1/25S/1086:1089		Tandem non-canonical cWW pairs
geometric
IL_3WBM_003
IL_85033.2
IL_7OSM_1271/25S/1074:1076,
1/25S/1083:1084		Single bulged G
homologous
IL_8C3A_048
NA
IL_7OSM_1281/25S/1120:1122,
1/25S/1136:1138		Isolated non-canonical cWW pair
homologous
IL_5TBW_046
NA
IL_7OSM_1291/25S/1167:1171,
1/25S/1328:1332		UAA/GAN
homologous
IL_5TBW_048
NA
IL_7OSM_1301/25S/1173:1180,
1/25S/1325:1326		SSU/LSU pseudoknot
geometric
IL_5TBW_049
NA
IL_7OSM_1311/25S/1180:1182,
1/25S/1324:1325		Single bulged U
homologous
IL_5TBW_050
NA
IL_7OSM_1321/25S/1187:1194,
1/25S/1314:1319		No text annotation
geometric
IL_5TBW_051
NA
IL_7OSM_1331/25S/1194:1205,
1/25S/1299:1314		No text annotation
geometric
IL_5TBW_052
NA
IL_7OSM_1341/25S/1207:1209,
1/25S/1296:1297		Single bulged U
homologous
IL_8C3A_056
NA
IL_7OSM_1351/25S/1218:1226,
1/25S/1283:1287		Kink-turn
homologous
IL_5TBW_054
NA
IL_7OSM_1361/25S/1234:1238,
1/25S/1250:1254		No text annotation
homologous
IL_8C3A_058
NA
IL_7OSM_1371/25S/1262:1266,
1/25S/1275:1277		Major groove platform with extra cWW
homologous
IL_8C3A_059
NA
IL_7OSM_1381/25S/1376:1378,
1/25S/1428:1431		Isolated cWS basepair
homologous
IL_5TBW_057
NA
IL_7OSM_1391/25S/1385:1387,
1/25S/1420:1421		Single bulged A
homologous
IL_5TBW_058
NA
IL_7OSM_1401/25S/1388:1395,
1/25S/1415:1419		Kink-turn
homologous
IL_5TBW_059
NA
IL_7OSM_1411/25S/1398:1400,
1/25S/1411:1412		Single bulged A
homologous
IL_5TBW_060
NA
IL_7OSM_1421/25S/1444:1450,
1/25S/2354:2359		No text annotation
homologous
IL_8C3A_065
NA
IL_7OSM_2401/25S/1501:1505,
1/25S/1513:1515		C-loop
homologous
IL_8P9A_290
IL_63596.11
IL_7OSM_1441/25S/1532:1536,
1/25S/1585:1590		UAA/GAN
homologous
IL_8C3A_067
NA
IL_7OSM_2411/25S/1618:1621,
1/25S/1824:1826		No text annotation
homologous
IL_8P9A_292
IL_15698.3
IL_7OSM_1461/25S/1623:1624,
1/25S/1819:1822		Major groove platform related
geometric
IL_8P9A_293
IL_48076.6
IL_7OSM_2421/25S/1623:1631,
1/25S/1811:1822		No text annotation
IL_7OSM_1471/25S/1626:1631,
1/25S/1811:1817		No text annotation
IL_7OSM_1481/25S/1645:1649,
1/25S/1806:1810		Triple sheared
homologous
IL_8C3A_073
NA
IL_7OSM_1491/25S/1661:1663,
1/25S/1786:1788		Isolated non-canonical cWW pair
homologous
IL_8C3A_074
NA
IL_7OSM_1501/25S/1669:1670,
1/25S/1778:1780		Single bulged C
homologous
IL_8C3A_075
NA
IL_7OSM_1511/25S/1670:1671,
1/25S/1776:1778		Single stack bend
homologous
IL_5TBW_070
NA
IL_7OSM_1521/25S/1694:1698,
1/25S/1747:1752		No text annotation
homologous
IL_8C3A_077
NA
IL_7OSM_1531/25S/1702:1707,
1/25S/1737:1743		No text annotation
homologous
IL_5TBW_072
NA
IL_7OSM_1541/25S/1711:1717,
1/25S/1727:1733		Kink-turn
homologous
IL_5TBW_073
NA
IL_7OSM_1551/25S/1883:1889,
1/25S/2346:2349		No text annotation
homologous
IL_8C3A_080
NA
IL_7OSM_1561/25S/1895:1897,
1/25S/2338:2340		No text annotation
homologous
IL_8C3A_081
NA
IL_7OSM_1571/25S/1898:1901,
1/25S/2336:2337		Major groove platform; stack outside cWW
homologous
IL_8C3A_082
NA
IL_7OSM_2431/25S/1898:1906,
1/25S/2333:2337		No text annotation
homologous
IL_8C3A_484
NA
IL_7OSM_1581/25S/1901:1906,
1/25S/2333:2336		Intercalated tWH
geometric
IL_5TBW_077
NA
IL_7OSM_1591/25S/1918:1923,
1/25S/1928:1934		No text annotation
homologous
IL_8C3A_084
NA
IL_7OSM_1601/25S/1940:1942,
1/25S/2106:2108		Isolated non-canonical cWW pair
homologous
IL_5TBW_079
NA
IL_7OSM_1611/25S/1947:1948,
1/25S/2098:2101		No text annotation
homologous
IL_5TBW_080
NA
IL_7OSM_1621/25S/2128:2129,
1/25S/2323:2325		Single bulged A
homologous
IL_5TBW_082
NA
IL_7OSM_1631/25S/2156:2161,
1/25S/2173:2180		Kink-turn related
homologous
IL_5TBW_083
NA
IL_7OSM_1641/25S/2196:2199,
1/25S/2245:2246		No text annotation
homologous
IL_8C3A_089
NA
IL_7OSM_1651/25S/2200:2201,
1/25S/2241:2244		Multiple bulged bases
homologous
IL_8C3A_090
NA
IL_7OSM_1661/25S/2204:2206,
1/25S/2237:2238		Single bulged U
geometric
IL_3TZR_002
IL_89505.4
IL_7OSM_1671/25S/2206:2210,
1/25S/2235:2237		Major groove platform with extra pair
homologous
IL_5TBW_087
NA
IL_7OSM_1681/25S/2211:2217,
1/25S/2228:2234		No text annotation
homologous
IL_5TBW_088
NA
IL_7OSM_1691/25S/2276:2277,
1/25S/2307:2310		No text annotation
homologous
IL_8C3A_094
NA
IL_7OSM_1701/25S/2277:2288,
1/25S/2304:2307		No text annotation
homologous
IL_8C3A_095
NA
IL_7OSM_1711/25S/2391:2394,
1/25S/2986:2988		Major groove platform with extra pair
homologous
IL_5TBW_091
NA
IL_7OSM_1721/25S/2396:2398,
1/25S/2981:2984		No text annotation
homologous
IL_8C3A_097
NA
IL_7OSM_1731/25S/2409:2411,
1/25S/2811:2812		Single bulged U
homologous
IL_5TBW_093
NA
IL_7OSM_1741/25S/2412:2413,
1/25S/2807:2810		Minor groove platform
homologous
IL_5TBW_094
NA
IL_7OSM_1751/25S/2423:2425,
1/25S/2604:2607		No text annotation
homologous
IL_8C3A_100
NA
IL_7OSM_1761/25S/2520:2526,
1/25S/2584:2587		No text annotation
homologous
IL_5TBW_096
NA
IL_7OSM_1771/25S/2614:2615,
1/25S/2625:2627		Single bulged A
homologous
IL_5TBW_098
NA
IL_7OSM_1781/25S/2666:2668,
1/25S/2686:2690		Isolated tHS basepair with bulges
geometric
IL_5TBW_099
NA
IL_7OSM_1791/25S/2718:2721,
1/25S/2735:2738		Tandem non-canonical cWW pairs
homologous
IL_5TBW_100
NA
IL_7OSM_1801/25S/2770:2773,
1/25S/2787:2788		Single stack bend with bulge
homologous
IL_8C3A_110
NA
IL_7OSM_1811/25S/2823:2824,
1/25S/2865:2867		Major groove platform
homologous
IL_5TBW_102
NA
IL_7OSM_2451/25S/2823:2826,
1/25S/2863:2867		No text annotation
homologous
IL_8C3A_111
NA
IL_7OSM_1821/25S/2824:2826,
1/25S/2863:2865		Isolated non-canonical cWW pair
geometric
IL_5TBW_103
NA
IL_7OSM_1831/25S/2826:2828,
1/25S/2862:2863		Major groove platform
geometric
IL_5TBW_104
NA
IL_7OSM_1841/25S/2828:2830,
1/25S/2858:2862		Major groove minor groove platform with extra cWW
geometric
IL_5TBW_105
NA
IL_7OSM_1851/25S/2835:2839,
1/25S/2849:2853		No text annotation
homologous
IL_8C3A_114
NA
IL_7OSM_1861/25S/2876:2877,
1/25S/2949:2951		Major groove platform
homologous
IL_8C3A_115
NA
IL_7OSM_1871/25S/2879:2881,
1/25S/2943:2947		No text annotation
homologous
IL_8C3A_116
NA
IL_7OSM_1881/25S/2881:2882,
1/25S/2940:2943		Multiple bulged bases
geometric
IL_5TBW_109
NA
IL_7OSM_1891/25S/2889:2891,
1/25S/2912:2914		Isolated non-canonical cWW pair
homologous
IL_8C3A_118
NA
IL_7OSM_1901/25S/2891:2892,
1/25S/2909:2912		Major groove platform with intercalation
geometric
IL_5TBW_111
NA
IL_7OSM_1911/25S/2918:2920,
1/25S/2926:2928		Isolated non-canonical cWW pair
geometric
IL_5TBW_112
NA
IL_7OSM_1921/25S/2960:2961,
1/25S/2970:2972		Single bulged A
homologous
IL_5TBW_113
NA
IL_7OSM_1931/25S/3004:3007,
1/25S/3139:3144		Double sheared
homologous
IL_8C3A_123
NA
IL_7OSM_1941/25S/3012:3014,
1/25S/3040:3042		Isolated non-canonical cWW pair
homologous
IL_8C3A_124
NA
IL_7OSM_1951/25S/3018:3025,
1/25S/3030:3036		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA
IL_7OSM_1961/25S/3047:3051,
1/25S/3091:3094		Major groove minor groove platform with tHH
homologous
IL_5TBW_117
NA
IL_7OSM_1971/25S/3054:3059,
1/25S/3084:3088		UAA/GAN related
homologous
IL_5TBW_118
NA
IL_7OSM_1981/25S/3063:3064,
1/25S/3077:3080		No text annotation
homologous
IL_8C3A_128
NA
IL_7OSM_1991/25S/3103:3107,
1/25S/3127:3131		UAA/GAN
homologous
IL_8C3A_129
NA
IL_7OSM_2001/25S/3164:3166,
1/25S/3284:3286		Isolated non-canonical cWW pair
homologous
IL_8C3A_130
NA
IL_7OSM_2011/25S/3168:3170,
1/25S/3280:3282		Isolated non-canonical cWW pair
homologous
IL_5TBW_122
NA
IL_7OSM_2021/25S/3177:3179,
1/25S/3210:3211		Single bulged A
homologous
IL_5TBW_123
NA
IL_7OSM_2031/25S/3179:3188,
1/25S/3204:3210		No text annotation
geometric
IL_5TBW_124
NA
IL_7OSM_2041/25S/3193:3194,
1/25S/3197:3199		Single bulged U
geometric
IL_5TBW_125
NA
IL_7OSM_2051/25S/3223:3230,
1/25S/3257:3262		No text annotation
IL_7OSM_2061/25S/3233:3235,
1/25S/3252:3254		Isolated non-canonical cWW pair
homologous
IL_5TBW_127
NA
IL_7OSM_2071/25S/3235:3238,
1/25S/3249:3252		Tandem non-canonical cWW pairs
geometric
IL_3R2D_002
IL_77658.1
IL_7OSM_2081/25S/3318:3320,
1/25S/3387:3388		Single bulged U
geometric
IL_5J7L_298
IL_89505.4
IL_7OSM_2091/25S/3324:3325,
1/25S/3381:3383		Single bulged U
homologous
IL_5TBW_131
NA
IL_7OSM_2101/25S/3328:3330,
1/25S/3373:3378		Isolated non-canonical cWW pair
homologous
IL_5TBW_132
NA
IL_7OSM_2111/25S/3332:3337,
1/25S/3367:3371		No text annotation
homologous
IL_8C3A_139
NA
IL_7OSM_2121/25S/3340:3342,
1/25S/3363:3364		Single bulged U
homologous
IL_5TBW_134
NA
IL_7OSM_2131/25S/3342:3345,
1/25S/3360:3363		Double sheared; A in syn
homologous
IL_8C3A_141
NA
IL_7OSM_2141/58S/64:67,
1/58S/92:96		No text annotation
geometric
IL_1GID_008
NA
IL_7OSM_2151/58S/68:69,
1/58S/89:91		Single bulged U
homologous
IL_5TBW_146
NA
IL_7OSM_2161/58S/69:73,
1/58S/78:89		Kink-turn related
homologous
IL_5TBW_147
NA
IL_7OSM_2171/AB/15:16,
1/AB/63:65		Single bulged A
homologous
IL_5TBW_372
NA
IL_7OSM_2181/AB/21:27,
1/AB/53:58		Minor groove platform related
homologous
IL_5TBW_373
NA
IL_7OSM_2191/AB/28:29,
1/AB/49:52		Minor groove platform
geometric
IL_5TBW_374
NA
IL_7OSM_2471/AB/28:30,
1/AB/47:52		No text annotation
homologous
IL_4WF9_114
NA
IL_7OSM_2201/AB/29:30,
1/AB/47:49		Single stack bend
homologous
IL_5TBW_375
NA
IL_7OSM_2211/AB/32:36,
1/AB/41:45		Symmetric double minor groove platform
homologous
IL_5TBW_376
NA
IL_7OSM_2221/AB/72:80,
1/AB/100:106		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_377
NA
IL_7OSM_2231/AB/84:87,
1/AB/94:96		Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA

Problematic loops

#loop idProblemSequence
IL_7OSM_013No text annotation
IL_7OSM_014Isolated tHS basepair with bulges
IL_7OSM_026Minor groove platform with extra cWW
IL_7OSM_039Tandem non-canonical cWW pairs with near WC pairs
IL_7OSM_041Tandem non-canonical cWW pairs
IL_7OSM_048Isolated non-canonical cWW pair
IL_7OSM_060Isolated non-canonical cWW contact
IL_7OSM_061No text annotation
IL_7OSM_062Isolated non-canonical cWW pair
IL_7OSM_066No text annotation
IL_7OSM_071No text annotation
IL_7OSM_231No text annotation
IL_7OSM_232No text annotation
IL_7OSM_091No text annotation
IL_7OSM_092No text annotation
IL_7OSM_233No text annotation
IL_7OSM_234No text annotation
IL_7OSM_093No text annotation
IL_7OSM_099No text annotation
IL_7OSM_102No text annotation
IL_7OSM_236No text annotation
IL_7OSM_237Isolated non-canonical cWW pair
IL_7OSM_125No text annotation
IL_7OSM_239No text annotation
IL_7OSM_143No text annotation
IL_7OSM_145No text annotation
IL_7OSM_244Isolated non-canonical cWW pair
IL_7OSM_246Tandem non-canonical cWW pairs

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7OSM_0011/18S/41:42,
1/18S/433:439,
1/18S/464:466		No text annotation
geometric
J3_8C3A_082
NA
J3_7OSM_0311/18S/41:48,
1/18S/431:439,
1/18S/464:466		No text annotation
homologous
J3_8P9A_069
J3_46317.4
J3_7OSM_0021/18S/633:635,
1/18S/861:865,
1/18S/965:966		No text annotation
geometric
J3_4V88_080
NA
J3_7OSM_0321/18S/633:635,
1/18S/861:866,
1/18S/962:966		No text annotation
homologous
J3_8P9A_072
J3_17385.4
J3_7OSM_0031/18S/760:763,
1/18S/773:775,
1/18S/785:790		No text annotation
homologous
J3_4V88_032
NA
J3_7OSM_0041/18S/881:884,
1/18S/928:936,
1/18S/943:947		No text annotation
homologous
J3_4V88_033
NA
J3_7OSM_0051/18S/1037:1039,
1/18S/1079:1083,
1/18S/1090:1094		No text annotation
homologous
J3_4V88_034
NA
J3_7OSM_0061/18S/1161:1164,
1/18S/1581:1587,
1/18S/1609:1616		No text annotation
homologous
J3_4V88_035
NA
J3_7OSM_0331/18S/1168:1171,
1/18S/1468:1470,
1/18S/1574:1577		No text annotation
homologous
J3_8C3A_039
NA
J3_7OSM_0341/18S/1180:1187,
1/18S/1198:1209,
1/18S/1454:1458		No text annotation
homologous
J3_8C3A_040
NA
J3_7OSM_0091/18S/1215:1222,
1/18S/1261:1267,
1/18S/1442:1448		No text annotation
J3_7OSM_0521/18S/1215:1233,
1/18S/1252:1267,
1/18S/1442:1448		No text annotation
J3_7OSM_0101/18S/1283:1288,
1/18S/1327:1332,
1/18S/1419:1424		No text annotation
homologous
J3_4V88_039
NA
J3_7OSM_0111/18S/1293:1294,
1/18S/1303:1306,
1/18S/1318:1322		No text annotation
homologous
J3_8C3A_085
NA
J3_7OSM_0121/18S/1336:1338,
1/18S/1386:1389,
1/18S/1412:1415		No text annotation
homologous
J3_4V88_040
NA
J3_7OSM_0531/18S/1336:1338,
1/18S/1386:1391,
1/18S/1407:1415		No text annotation
homologous
J3_8C3A_086
NA
J3_7OSM_0131/18S/1470:1474,
1/18S/1533:1540,
1/18S/1571:1574		No text annotation
homologous
J3_4V88_041
NA
J3_7OSM_0141/25S/113:123,
1/25S/149:158,
1/25S/263:267		No text annotation
homologous
J3_8C3A_001
NA
J3_7OSM_0541/25S/113:124,
1/25S/144:158,
1/25S/263:267		No text annotation
J3_7OSM_0401/25S/185:191,
1/25S/204:214,
1/25S/226:232		No text annotation
J3_7OSM_0411/25S/340:356,
1/25S/363:368,
1/58S/21:24		No text annotation
homologous
J3_8C3A_047
NA
J3_7OSM_0151/25S/369:376,
1/25S/403:404,
1/58S/19:20		No text annotation
homologous
J3_5TBW_002
NA
J3_7OSM_0421/25S/369:379,
1/25S/390:404,
1/58S/19:20		No text annotation
homologous
J3_8C3A_049
NA
J3_7OSM_0161/25S/502:503,
1/25S/588:597,
1/25S/606:611		No text annotation
homologous
J3_5TBW_003
NA
J3_7OSM_0171/25S/814:820,
1/25S/905:907,
1/25S/923:926		No text annotation
homologous
J3_8C3A_003
NA
J3_7OSM_0181/25S/829:831,
1/25S/863:867,
1/25S/892:895		No text annotation
homologous
J3_8C3A_004
NA
J3_7OSM_0191/25S/986:987,
1/25S/1062:1066,
1/25S/1092:1098		No text annotation
homologous
J3_8P9A_051
J3_09667.1
J3_7OSM_0201/25S/1230:1232,
1/25S/1256:1262,
1/25S/1277:1279		No text annotation
homologous
J3_8C3A_005
NA
J3_7OSM_0211/25S/1479:1485,
1/25S/1857:1859,
1/25S/1871:1874		No text annotation
homologous
J3_8C3A_006
NA
J3_7OSM_0221/25S/1488:1491,
1/25S/1837:1843,
1/25S/1852:1854		No text annotation
homologous
J3_5TBW_009
NA
J3_7OSM_0231/25S/1526:1531,
1/25S/1591:1595,
1/25S/1612:1613		No text annotation
homologous
J3_5TBW_010
NA
J3_7OSM_0441/25S/1537:1542,
1/25S/1551:1561,
1/25S/1579:1584		No text annotation
J3_7OSM_0241/25S/1631:1632,
1/25S/1641:1645,
1/25S/1810:1811		No text annotation
homologous
J3_8C3A_054
NA
J3_7OSM_0451/25S/1654:1658,
1/25S/1791:1792,
1/25S/1796:1801		No text annotation
homologous
J3_8P9A_058
J3_12393.2
J3_7OSM_0251/25S/2432:2435,
1/25S/2512:2517,
1/25S/2590:2597		No text annotation
homologous
J3_8C3A_008
NA
J3_7OSM_0551/25S/2529:2533,
1/25S/2546:2563,
1/25S/2578:2581		No text annotation
J3_7OSM_0471/25S/2651:2653,
1/25S/2754:2765,
1/25S/2793:2798		No text annotation
homologous
J3_8C3A_056
NA
J3_7OSM_0261/25S/2664:2666,
1/25S/2690:2692,
1/25S/2701:2706		No text annotation
homologous
J3_5TBW_013
NA
J3_7OSM_0271/25S/2886:2889,
1/25S/2914:2916,
1/25S/2930:2936		No text annotation
homologous
J3_5TBW_014
NA
J3_7OSM_0481/25S/3168:3176,
1/25S/3212:3220,
1/25S/3265:3282		No text annotation
J3_7OSM_0281/25S/3298:3303,
1/25S/3311:3318,
1/25S/3388:3390		No text annotation
J3_7OSM_0291/58S/44:45,
1/58S/58:64,
1/58S/96:100		No text annotation
geometric
J3_5TBW_071
NA
J3_7OSM_0491/58S/44:45,
1/58S/58:66,
1/58S/93:100		No text annotation
J3_7OSM_0301/AB/9:14,
1/AB/66:67,
1/AB/111:112		No text annotation
homologous
J3_5TBW_045
NA
J3_7OSM_0561/ASIT/6:27,
1/ASIT/43:53,
1/ASIT/62:67		No text annotation
J3_08158.1
J4_7OSM_0011/18S/99:107,
1/18S/307:309,
1/18S/357:361,
1/18S/383:384		No text annotation
homologous
J4_8C3A_021
NA
J4_7OSM_0021/18S/622:624,
1/18S/975:980,
1/18S/1021:1032,
1/18S/1103:1104		No text annotation
homologous
J4_8C3A_022
NA
J4_7OSM_0031/25S/112:113,
1/25S/267:272,
1/25S/293:299,
1/25S/316:319		No text annotation
homologous
J4_8P9A_012
J4_45801.6
J4_7OSM_0041/25S/1451:1457,
1/25S/1475:1476,
1/25S/1877:1880,
1/25S/2352:2353		No text annotation
homologous
J4_8P9A_014
J4_87855.1
J4_7OSM_0051/25S/1492:1496,
1/25S/1520:1525,
1/25S/1614:1615,
1/25S/1829:1836		No text annotation
homologous
J4_8P9A_015
J4_69051.6
J4_7OSM_0061/25S/1674:1675,
1/25S/1693:1694,
1/25S/1752:1753,
1/25S/1772:1773		No text annotation
homologous
J4_8C3A_005
NA
J4_7OSM_0071/25S/2130:2134,
1/25S/2146:2150,
1/25S/2186:2190,
1/25S/2317:2322		No text annotation
homologous
J4_8P9A_017
J4_07509.2
J4_7OSM_0081/25S/2192:2194,
1/25S/2248:2249,
1/25S/2267:2276,
1/25S/2310:2315		No text annotation
homologous
J4_8P9A_018
J4_93343.1
J4_7OSM_0121/25S/2654:2658,
1/25S/2712:2716,
1/25S/2740:2742,
1/25S/2751:2753		No text annotation
homologous
J4_8P9A_019
J4_04930.6
J4_7OSM_0101/25S/3010:3012,
1/25S/3042:3043,
1/25S/3098:3100,
1/25S/3134:3136		No text annotation
homologous
J4_8P9A_020
J4_65356.1
J4_7OSM_0131/PSIT/7:10,
1/PSIT/26:28,
1/PSIT/44:50,
1/PSIT/66:67		tRNA junction
homologous
J4_1QU2_001
J4_70449.28
J5_7OSM_0011/18S/31:35,
1/18S/473:479,
1/18S/509:516,
1/18S/536:546,
1/18S/592:595		No text annotation
J5_7OSM_0021/18S/54:57,
1/18S/90:97,
1/18S/386:388,
1/18S/409:411,
1/18S/422:426		No text annotation
homologous
J5_8C3A_020
NA
J5_7OSM_0031/18S/636:641,
1/18S/693:699,
1/18S/739:744,
1/18S/807:817,
1/18S/854:860		No text annotation
J5_7OSM_0041/25S/20:22,
1/58S/35:42,
1/58S/102:107,
1/58S/115:116,
1/58S/137:139		No text annotation
homologous
J5_8P9A_010
J5_01737.2
J5_7OSM_0051/25S/658:663,
1/25S/799:802,
1/25S/941:944,
1/25S/1375:1376,
1/25S/1431:1437		No text annotation
homologous
J5_8C3A_002
NA
J5_7OSM_0061/25S/675:678,
1/25S/702:706,
1/25S/713:721,
1/25S/749:751,
1/25S/782:787		No text annotation
homologous
J5_8P9A_012
J5_23272.1
J5_7OSM_0071/25S/1906:1914,
1/25S/1938:1939,
1/25S/2109:2110,
1/25S/2114:2122,
1/25S/2331:2333		No text annotation
homologous
J5_8P9A_013
J5_62523.6
J5_7OSM_0081/25S/2399:2406,
1/25S/2815:2823,
1/25S/2867:2876,
1/25S/2951:2957,
1/25S/2975:2980		No text annotation
J5_7OSM_0091/25S/2416:2419,
1/25S/2611:2614,
1/25S/2627:2628,
1/25S/2650:2651,
1/25S/2798:2804		No text annotation
homologous
J5_8P9A_015
J5_08912.1
J6_7OSM_0031/25S/22:27,
1/25S/58:68,
1/25S/75:79,
1/25S/106:110,
1/25S/321:331,
1/58S/32:35		No text annotation
J6_7OSM_0021/25S/2416:2419,
1/25S/2611:2614,
1/25S/2627:2628,
1/25S/2650:2653,
1/25S/2754:2765,
1/25S/2793:2804		No text annotation
J7_7OSM_0011/25S/949:956,
1/25S/965:968,
1/25S/1114:1117,
1/25S/1141:1146,
1/25S/1157:1161,
1/25S/1338:1339,
1/25S/1365:1370		No text annotation

Problematic loops

#loop idProblemSequence
J3_7OSM_007No text annotation
J3_7OSM_008No text annotation
J3_7OSM_035No text annotation
J3_7OSM_036No text annotation
J3_7OSM_037No text annotation
J3_7OSM_038No text annotation
J3_7OSM_039No text annotation
J3_7OSM_043No text annotation
J3_7OSM_046No text annotation
J3_7OSM_050No text annotation
J3_7OSM_051No text annotation
J4_7OSM_009No text annotation
J4_7OSM_011No text annotation
J6_7OSM_001No text annotation

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