HL_7OSM_004

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUCAGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_004 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.3752

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

7OSM|1|18S|C|184
7OSM|1|18S|U|185
7OSM|1|18S|C|186
7OSM|1|18S|A|198
7OSM|1|18S|G|199
7OSM|1|18S|A|200
7OSM|1|18S|G|201

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS8

40S ribosomal protein S8