HL_7OSM_013

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_013 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.1172

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7OSM|1|18S|A|520
7OSM|1|18S|A|521
7OSM|1|18S|U|522
7OSM|1|18S|G|523
7OSM|1|18S|U|524
7OSM|1|18S|A|525
7OSM|1|18S|A|526
7OSM|1|18S|A|527
7OSM|1|18S|U|528
7OSM|1|18S|A|529
7OSM|1|18S|C|530
7OSM|1|18S|C|531
7OSM|1|18S|U|532

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS24

40S ribosomal protein S24

Chain uS4

BJ4_G0026100.mRNA.1.CDS.1