HL_7OSM_028

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_028 not in the Motif Atlas

Homologous match to HL_4V88_214

Geometric discrepancy: 0.1176

The information below is about HL_4V88_214

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7OSM|1|18S|A|1296
7OSM|1|18S|G|1297
7OSM|1|18S|U|1298
7OSM|1|18S|G|1299
7OSM|1|18S|A|1300
7OSM|1|18S|U|1301

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain uS2

40S ribosomal protein S0

Chain uS5

40S ribosomal protein S2