HL_7OSM_041

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

7OSM|1|25S|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_041 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.1154

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7OSM|1|25S|U|194
7OSM|1|25S|U|195
7OSM|1|25S|G|196
7OSM|1|25S|G|197
7OSM|1|25S|A|198
7OSM|1|25S|A|199
7OSM|1|25S|C|200
7OSM|1|25S|A|201

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL32

HN1_G0013350.mRNA.1.CDS.1

Chain uL24

60S ribosomal protein L26-A

Chain uL4

BJ4_G0008850.mRNA.1.CDS.1