HL_7OSM_046

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_046 not in the Motif Atlas

Homologous match to HL_5TBW_010

Geometric discrepancy: 0.077

The information below is about HL_5TBW_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7OSM|1|25S|A|357
7OSM|1|25S|G|358
7OSM|1|25S|U|359
7OSM|1|25S|G|360
7OSM|1|25S|A|361
7OSM|1|25S|U|362

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL37

Ribosomal protein L37

Chain eL39

60S ribosomal protein L39

Chain uL4

BJ4_G0008850.mRNA.1.CDS.1