HL_7OSM_049

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

ACGUAAGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_049 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3804

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

7OSM|1|25S|A|598
7OSM|1|25S|C|599
7OSM|1|25S|G|600
7OSM|1|25S|U|601
7OSM|1|25S|A|602
7OSM|1|25S|A|603
7OSM|1|25S|G|604
7OSM|1|25S|U|605

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL6

60S ribosomal protein L6

Chain uL30

60S ribosomal protein L7-A

Chain uL4

BJ4_G0008850.mRNA.1.CDS.1