HL_7OSM_067

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_067 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.1152

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7OSM|1|25S|A|1462
7OSM|1|25S|U|1463
7OSM|1|25S|G|1464
7OSM|1|25S|A|1465
7OSM|1|25S|G|1466
7OSM|1|25S|A|1467
7OSM|1|25S|A|1468
7OSM|1|25S|C|1469
7OSM|1|25S|U|1470

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL19

60S ribosomal protein L19-A

Chain eL31

BJ4_G0008090.mRNA.1.CDS.1

Chain uL22

BJ4_G0005750.mRNA.1.CDS.1