HL_7OSM_068

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

7OSM|1|25S|G|1507, 7OSM|1|25S|U|1511

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_068 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.1298

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

7OSM|1|25S|A|1506
7OSM|1|25S|G|1507
7OSM|1|25S|C|1508
7OSM|1|25S|A|1509
7OSM|1|25S|G|1510
7OSM|1|25S|U|1511
7OSM|1|25S|U|1512

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL19

60S ribosomal protein L19-A

Chain eL39

60S ribosomal protein L39

Chain uL22

BJ4_G0005750.mRNA.1.CDS.1