HL_7OSM_069

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAGCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_069 not in the Motif Atlas

Homologous match to HL_5TBW_033

Geometric discrepancy: 0.1433

The information below is about HL_5TBW_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7OSM|1|25S|G|1544
7OSM|1|25S|A|1545
7OSM|1|25S|A|1546
7OSM|1|25S|G|1547
7OSM|1|25S|C|1548
7OSM|1|25S|U|1549

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL15

60S ribosomal protein L15-A

Chain eL37

Ribosomal protein L37