HL_7OSM_072

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUAAC

Length

6 nucleotides

Bulged bases

7OSM|1|25S|A|1638

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_072 not in the Motif Atlas

Homologous match to HL_5TBW_036

Geometric discrepancy: 0.1358

The information below is about HL_5TBW_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7OSM|1|25S|G|1634
7OSM|1|25S|G|1635
7OSM|1|25S|U|1636
7OSM|1|25S|A|1637
7OSM|1|25S|A|1638
7OSM|1|25S|C|1639

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL27

60S ribosomal protein L27

Chain eL34

60S ribosomal protein L34-A