HL_7OSM_083

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGAAAGU

Length

7 nucleotides

Bulged bases

7OSM|1|25S|G|2169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_083 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.0887

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7OSM|1|25S|A|2164
7OSM|1|25S|G|2165
7OSM|1|25S|A|2166
7OSM|1|25S|A|2167
7OSM|1|25S|A|2168
7OSM|1|25S|G|2169
7OSM|1|25S|U|2170

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL15

60S ribosomal protein L15-A

Chain eL8

60S ribosomal protein L8-A

Chain uL2

60S ribosomal protein L2-B