HL_7OSM_087

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

7OSM|1|25S|A|2372, 7OSM|1|25S|A|2373, 7OSM|1|25S|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_087 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.081

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

7OSM|1|25S|G|2369
7OSM|1|25S|G|2370
7OSM|1|25S|G|2371
7OSM|1|25S|A|2372
7OSM|1|25S|A|2373
7OSM|1|25S|C|2374
7OSM|1|25S|G|2375
7OSM|1|25S|G|2376
7OSM|1|25S|G|2377
7OSM|1|25S|C|2378

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL32

HN1_G0013350.mRNA.1.CDS.1

Chain uL3

60S ribosomal protein L3