HL_7OSM_093

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_093 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.3225

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7OSM|1|25S|A|2673
7OSM|1|25S|A|2674
7OSM|1|25S|C|2675
7OSM|1|25S|A|2676
7OSM|1|25S|G|2677
7OSM|1|25S|A|2678
7OSM|1|25S|A|2679
7OSM|1|25S|A|2680
7OSM|1|25S|U|2681

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain ASIT

Transfer RNA; tRNA

Chain uL5

BJ4_G0027750.mRNA.1.CDS.1