3D structure

PDB id
7OSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CAAAAGGG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7OSM_094 not in the Motif Atlas
Homologous match to HL_5TBW_057
Geometric discrepancy: 0.0971
The information below is about HL_5TBW_057
Detailed Annotation
Pseudoknot geometry
Broad Annotation
No text annotation
Motif group
HL_93324.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
26

Unit IDs

7OSM|1|25S|C|2693
7OSM|1|25S|A|2694
7OSM|1|25S|A|2695
7OSM|1|25S|A|2696
7OSM|1|25S|A|2697
7OSM|1|25S|G|2698
7OSM|1|25S|G|2699
7OSM|1|25S|G|2700

Current chains

Chain 25S
25S rRNA

Nearby chains

Chain ASIT
Transfer RNA; tRNA
Chain eL21
BJ4_G0003770.mRNA.1.CDS.1
Chain eL42
BJ4_G0001880.mRNA.1.CDS.1
Chain uL16
60S ribosomal protein L10

Coloring options:


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