HL_7OSM_096

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_096 not in the Motif Atlas

Homologous match to HL_8C3A_060

Geometric discrepancy: 0.1309

The information below is about HL_8C3A_060

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7OSM|1|25S|U|2744
7OSM|1|25S|G|2745
7OSM|1|25S|A|2746
7OSM|1|25S|A|2747
7OSM|1|25S|A|2748
7OSM|1|25S|G|2749

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL21

BJ4_G0003770.mRNA.1.CDS.1

Chain eL42

BJ4_G0001880.mRNA.1.CDS.1

Chain uL18

60S ribosomal protein L5