HL_7OSM_102

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_102 not in the Motif Atlas

Homologous match to HL_8C3A_066

Geometric discrepancy: 0.075

The information below is about HL_8C3A_066

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7OSM|1|25S|C|3025
7OSM|1|25S|G|3026
7OSM|1|25S|A|3027
7OSM|1|25S|G|3028
7OSM|1|25S|A|3029
7OSM|1|25S|G|3030

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eEF2

Elongation factor 2

Chain eL40

Ubiquitin

Chain uL6

60S ribosomal protein L9-A