HL_7OSM_104

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

7OSM|1|25S|G|3116, 7OSM|1|25S|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_104 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1131

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7OSM|1|25S|C|3110
7OSM|1|25S|U|3111
7OSM|1|25S|G|3112
7OSM|1|25S|A|3113
7OSM|1|25S|A|3114
7OSM|1|25S|C|3115
7OSM|1|25S|G|3116
7OSM|1|25S|C|3117
7OSM|1|25S|C|3118
7OSM|1|25S|U|3119
7OSM|1|25S|C|3120
7OSM|1|25S|U|3121
7OSM|1|25S|A|3122
7OSM|1|25S|A|3123
7OSM|1|25S|G|3124

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL40

Ubiquitin

Chain uL13

60S ribosomal protein L16-A

Chain uL6

60S ribosomal protein L9-A