HL_7OSM_107

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

7OSM|1|25S|U|3304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_107 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.1039

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

7OSM|1|25S|G|3303
7OSM|1|25S|U|3304
7OSM|1|25S|A|3305
7OSM|1|25S|U|3306
7OSM|1|25S|A|3307
7OSM|1|25S|C|3308
7OSM|1|25S|G|3309
7OSM|1|25S|A|3310
7OSM|1|25S|C|3311

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL31

BJ4_G0008090.mRNA.1.CDS.1

Chain uL22

BJ4_G0005750.mRNA.1.CDS.1

Chain uL3

60S ribosomal protein L3