HL_7OSM_121

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCGUAUUGC

Length

9 nucleotides

Bulged bases

7OSM|1|18S|A|780, 7OSM|1|18S|U|781, 7OSM|1|18S|U|782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OSM_121 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3692

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05426.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

7OSM|1|18S|G|776
7OSM|1|18S|C|777
7OSM|1|18S|G|778
7OSM|1|18S|U|779
7OSM|1|18S|A|780
7OSM|1|18S|U|781
7OSM|1|18S|U|782
7OSM|1|18S|G|783
7OSM|1|18S|C|784

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS24

40S ribosomal protein S24

Chain eS4

40S ribosomal protein S4

Chain uS4

BJ4_G0026100.mRNA.1.CDS.1